Phragmites australis (common reed): 133921527
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Entry
133921527 CDS
T10575
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1-like
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
paua Phragmites australis (common reed)
Pathway
paua03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
133921527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
paua04121
]
133921527
03036 Chromosome and associated proteins [BR:
paua03036
]
133921527
Ubiquitin system [BR:
paua04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
133921527
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
133921527
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WD40_Gbeta
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WDR55
Beta-prop_WDR41
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_Aladin
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WD40_RFWD3
Beta-prop_Vps41
EIF3I
MIOS_WD40
Motif
Other DBs
NCBI-GeneID:
133921527
NCBI-ProteinID:
XP_062222428
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All DBs
Position
6:8827605..8832736
Genome browser
AA seq
356 aa
AA seq
DB search
MDHPKPRSTAASAAAASPDTLNPHAFTCELPHSIYALAFSPAAPVLASGSFLEDLHNRVS
LLSFDPVRPSAASFRALPALSFDHPYPPTKLQFNPRAAGPPLLASSSDALRLWHTPLDDL
SAAAAAPELRSVLDNRKASASELCAPLTSFDWNEIEPRRIGTASIDTTCTIWDIDRGVVE
TQLIAHDKAVHDIAWGEAGVFASVSADGSVRVFDLRDKEHSTIVYESPRPDTPLLRLAWN
RFDLRYMAALLMDSSAVVVLDIRAPGVPVAELHRHRACANAVAWAPQATRHLCSAGDDGQ
ALIWELPETAAAVPAEGIDPVLVYDAGAEINQLQWAAAHPDWIAIAFENKVQLLRV
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atggaccatccgaagccacggtccacggccgcctcggcggcggcggcgtcgccggacacg
ctgaacccgcacgccttcacctgcgagctcccgcactcgatctacgcgctcgccttctca
ccggccgcgcccgtcctcgcgtccggcagcttcctcgaggacctccacaaccgcgtctcc
ctcctctccttcgaccccgtccgcccctcggccgcctccttccgcgccctccccgcgctc
tccttcgaccacccctacccgcccaccaagctccagttcaacccccgcgccgccgggccg
cccctcctcgcatcctcctccgacgcgctccgcctctggcacaccccgctcgacgacctc
tccgccgccgccgccgcgcccgagctccgctccgtcctcgacaaccgcaaggcctccgcc
tccgagttgtgcgcgcccctcacctccttcgactggaacgagatcgagccccgccgcatc
gggaccgcctccatcgacaccacctgcaccatctgggacatcgaccgcggcgtcgtcgag
acgcagctcatcgcgcacgacaaggccgtgcacgatatcgcctggggcgaggccggggtc
ttcgcctccgtctcggccgacggctccgtccgcgtcttcgacctccgggacaaagagcac
tccaccatcgtctacgagagccctcgcccggacacgccgctcctcaggctggcatggaac
cgctttgacctccgctacatggccgcgctgctcatggacagcagcgctgtcgtcgtgctc
gacatacgcgcgcccggtgtgccggtggccgagctgcacaggcaccgtgcttgcgccaat
gcggtcgcgtgggcgccacaggccaccaggcacctctgctccgctggagacgacgggcag
gcattgatctgggagctacccgagacagcggcggctgtgcctgctgaggggattgatcct
gtgctagtgtatgacgcaggagcagagataaaccagctgcagtgggcggccgcccacccg
gattggatagccatcgcctttgagaacaaggtccagcttctcagggtctga
DBGET
integrated database retrieval system
