Phragmites australis (common reed): 133921675
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Entry
133921675 CDS
T10575
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133921675
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
133921675
mRNA degradation factors
5'-3' decay
Decapping complex
133921675
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Gene silencing
piRNA pathway
133921675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133921675
NCBI-ProteinID:
XP_062222635
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Position
6:complement(11424319..11432575)
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AA seq
503 aa
AA seq
DB search
MDPRARYSPGMGNGRGGNPNYYGRGGPPPQQQYHHQQHQQTSAAHRHQQYAQRQQQRHSQ
QQQQQQWLRRNQIAREAASAARTSEPKALAPSTAADGVDSSSQDWKAQLKLPPQDTRYKT
EDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKT
AAFCIPALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDD
IIRLYQPVHLLVGTPGRILDLTKKGVCILKDCSMLIMDEADKLLSPEFQPSVEQLIRYLP
ASRQILMFSATFPVTVKDFKDKYLPKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTL
FSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNL
VCTDLFTRGIDVQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYR
IEQELGTEIKQIPPQIDQAIYCQ
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggatccgcgggccaggtactctccgggcatgggcaacgggcgcggcgggaaccccaat
tactacgggcgcggcgggccgccgccgcagcagcagtaccaccaccaacagcaccagcag
acgtcggcggcgcaccgccaccagcagtacgcgcagaggcagcagcagcgccacagccag
cagcagcagcagcagcagtggctacggcggaaccagatcgcccgcgaggccgcgagcgcg
gcccggaccagcgagccgaaggccctggcgccatccacggccgccgatggcgtcgattcg
agttcacaagattggaaggcccaattgaagctgccacctcaagatacacgctacaagaca
gaggatgttactgccaccaagggaaatgagtttgaagactattttctcaagcgcgaactc
ctgatggggatatatgagaaaggatttgaaagaccctctcctatccaagaggaaagcatt
cctattgctttaactggtagtgacattcttgcaagagcaaagaatggaactggcaagacg
gctgcattttgtattcctgcactggaaaagattgatcaagataaaaatgctattcaagtt
gttatattggttcccacaagggaactggctctacaaacatcacaagtttgcaaggagctt
ggtaagcatttgaagatccaagttatggtcaccactggtggaaccagcctgaaggatgat
attattcgtctgtatcaacctgtccatttacttgttggaacacctgggcgtattttggat
cttacaaagaaaggtgtttgtattttgaaggactgttcaatgcttattatggatgaggca
gacaagcttctctctcctgagttccaaccttccgtggaacagttgattcgctaccttcca
gcgagtcgacagattttgatgttttcagcgacattccctgtgactgtcaaggatttcaag
gacaaatatcttcctaaaccttacgtgattaaccttatggatgaacttacactgaaggga
attacacagttctatgcttttgttgaagaaagacagaaagttcactgccttaacaccctc
ttttccaagcttcaaataaaccaatccataatattctgtaattctgtgaatcgtgttgag
ctattggcgaagaagattacagagcttggttattcttgcttctacattcatgcaaagatg
ctgcaagatcaccgcaatagagttttccatgatttccgtaacggggcatgcaggaacctt
gtttgtactgatctttttacaaggggaatagatgttcaagctgttaatgttgttatcaat
tttgatttccccaagaactctgaaacatatcttcacagggttggtagatctgggagattt
ggccaccttggtctggctgtgaacttgatcacctatgaggatcggtttaacttgtatagg
attgagcaagagcttgggactgaaataaaacaaattcctcctcagatagaccaggctata
tattgtcaatga
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