KEGG   Phragmites australis (common reed): 133922009
Entry
133922009         CDS       T10575                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2-like isoform X1
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
paua  Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:paua00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:paua04812]
    133922009
Cytoskeleton proteins [BR:paua04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     133922009
SSDB
Motif
Pfam: WD40 WD40_Prp19 Katanin_con80 WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st EIF3I Beta-prop_WDR90_POC16_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_SCAP Beta-prop_TEP1_C WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_SPT8 Beta-prop_HPS5 eIF2A WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_IP5PC_F Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_VPS8 WD40_like Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 133922009
NCBI-ProteinID: XP_062223139
LinkDB
Position
1:45180955..45188150
AA seq 919 aa
MFRTHPRRSTHLVFTALPEQRKKRRRSTSLSFLASQLPCSTDHSDPNPSPTRHRRRQRDD
PTTIALAGEPAGGLDWWGTGEGEPEEMNPEKRGYKLQEFVAHDAEVRSLAIGKKSSRMFI
TGGNDRKVNLWAIGKQTPLLSLSGHTGSVECVQFDSAEVLVLAGSSNGSIKLWDLEEAKV
VRSLTGHRSSCTAVEFHPFGEFFASGSSDTDLKIWDIKKKGCIHTYKGHRGAIRRIRFTP
DGRWVVTGGDDNIVKVWDLTAGKLLHDFKFHSGQIHCIDFHPQEFLLATGSADRTVKFWD
LETFELIGSAGPEGTSVRSMVFHPDGKALFCGLDQSLKVFSWEPVRCHDDVDMGWSHLAD
LSIYEGKLLGCSYHEHRVGLWVADISLIGPYALGVLPKANFFSELVHSMDDNPVKPIDST
ANSSPALAMAHPKNSYKVKELGIAESRVRGSHLTPANTDKIKKDRSSTIPRRPDSSFKSS
IQSSTPMRRMKLVDSPSTNPKTVERNFGQRDNSLTSRIGITNNSSTIKEGHLTESALVKD
IYTTSQAVSAPVVVPRDILEDKTVGSICRGTGGTATVPDDFQGAVHTRKPSLSGGAADSD
SSVRSLLTEPDVCSEGLSGLKFSFGLTPYYKKEEYGAADKEHITEIAEKMDKSVSLEHPL
QSNDDKSFESPCSTTETARVKYVRGVAVPLGKTKSLVERWEKREVSSIDCSPQTSSCGDR
EVRSDSPPSHLAEPSQTYEKDLSTDEVMTPINLARNHDKFINAVKLRLTKLEMLRHVFEQ
SGIKGAIAAMSKLPDNAVQADVVSALRGKLDLFNLEIFSSSLPVLAGLLSSKTERHATVS
LEMLLDLIKIFGPVIHSTLSANSTVGVDIQAEQRLQRCTRCFNHLQKIRQVLHPLIMRGG
QQAQLAQELSLSLQDLVVI
NT seq 2760 nt   +upstreamnt  +downstreamnt
atgttccgcacccacccacgccgctccacacacctcgttttcactgccctgccggaacaa
agaaaaaaaaggcgaagaagcacttcgctctcgttcctcgccagccaactcccttgctcc
acagaccactcggatcccaatccgagtcctactcgtcatcgccgacgacaacgcgacgac
cccaccaccatcgctctcgcgggcgagccagccggcggcttggactggtgggggactggg
gaaggggagccagaggagatgaaccccgagaagcgcggctacaagctccaggagttcgtg
gcacacgatgctgaagtgaggtccctagccatcggcaagaaatcgagccgtatgttcatc
accggtggcaatgatcgcaaggtcaacctgtgggccattggcaagcaaactccacttctg
agcttgtcaggccacacaggctcggtggagtgtgtgcagtttgattcagcagaggtgctt
gtgcttgctggctcatcaaatggctccatcaagctctgggacttagaggaagctaaagtt
gtgcggtctctcactgggcacagatcgagttgtactgctgttgaattccatccattcggc
gagttttttgcatctggttcgtcagatacagatcttaagatatgggatataaagaaaaaa
ggatgcattcacacatataagggtcacagaggagcaattagaagaatcaggtttacccct
gatggacgatgggttgtcaccggaggggatgataacattgtgaaggtgtgggatctgaca
gctggaaagcttctacatgatttcaagtttcacagcggacaaatccactgcattgatttt
catcctcaagaatttttgcttgcaacaggctcagctgatcggacagtgaaattttgggat
cttgaaacttttgaattgataggttctgctggacccgagggtaccagtgtacgttctatg
gtctttcacccagatggtaaagcccttttctgtggattagatcaaagcttaaaggtattc
tcttgggaaccagttagatgccatgacgatgttgacatggggtggagccatttggctgac
cttagtatttatgaagggaaactcttgggatgctcctaccatgaacaccgtgttggtcta
tgggttgctgatatatcactcattggaccttatgctcttggtgttttgcccaaagcaaat
tttttctctgagcttgtgcattctatggatgataatcctgtgaaaccaattgatagcact
gcaaattccagtcctgctttagcaatggcacatccaaaaaattcatacaaagtcaaggag
ttggggattgctgaaagcagagttcgtggctcacatttgactccagcaaatacagataag
atcaagaaagataggagcagtactattccacgaagacctgattcatctttcaaatcatct
attcagagttctactccaatgaggcgtatgaagcttgttgatagtccttctaccaatcca
aaaacggtggaacgtaattttggacagagggacaactcattaacatctcgtataggaata
actaataattcttcaactattaaggaaggccatcttacagagtcagcattggtgaaagat
atttacactacgtcacaggctgtttctgcacctgttgttgtaccgagagatattttagag
gacaaaacagtaggcagtatttgtagaggaactggaggcacagctacagtcccagatgat
tttcagggtgctgttcacacaagaaaaccctcacttagtggtggtgctgctgatagtgat
agctcagtaagatccttgctcactgaacctgatgtttgctcagagggtttgtctggccta
aaattctcctttggactaactccgtattacaagaaagaagaatatggcgctgcagataaa
gaacatattacagaaatagcagaaaagatggacaaatcagtgtcgctagagcatcctctg
cagtcaaatgatgataagtcctttgaatcaccatgctcaacgacagaaacagccagggtc
aaatatgtcagaggagttgctgtgccactgggaaaaacaaagtctcttgttgagaggtgg
gaaaagagagaagtttctagcattgattgttcaccacaaaccagttcttgtggcgaccgg
gaagtgagaagtgacagccctccgtcccatttggcagaaccaagtcagacatatgaaaag
gacttgtcaaccgatgaggtgatgactcctatcaatttagcgcggaaccatgacaagttc
ataaatgctgtaaaacttcggctgacaaaactagagatgttgcggcatgtctttgagcaa
agtggtattaaaggagcaattgctgcaatgtcaaagctgcctgacaatgctgttcaagct
gatgttgttagtgctctcagaggcaagcttgaccttttcaacctggagattttctcaagc
tctctgcctgttcttgcagggttactgagcagcaagactgaaaggcatgctacggtttcc
ttggaaatgttgttggatcttataaagatttttggaccagttattcattcaacattatca
gcaaattcaaccgttggagttgatattcaggctgagcagaggttgcagcgttgcacacgg
tgttttaaccatctgcaaaagattcgacaagttctacatccattgattatgcggggtggt
caacaagcacaacttgctcaagaactaagtctttctttgcaagacttggtggttatctaa

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