Phragmites australis (common reed): 133922116
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Entry
133922116 CDS
T10575
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like
KO
K07466
replication factor A1
Organism
paua Phragmites australis (common reed)
Pathway
paua03030
DNA replication
paua03420
Nucleotide excision repair
paua03430
Mismatch repair
paua03440
Homologous recombination
paua03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133922116
03420 Nucleotide excision repair
133922116
03430 Mismatch repair
133922116
03440 Homologous recombination
133922116
03460 Fanconi anemia pathway
133922116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
paua03000
]
133922116
03032 DNA replication proteins [BR:
paua03032
]
133922116
03400 DNA repair and recombination proteins [BR:
paua03400
]
133922116
Transcription factors [BR:
paua03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
133922116
DNA replication proteins [BR:
paua03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
133922116
DNA repair and recombination proteins [BR:
paua03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
133922116
MMR (mismatch excision repair)
133922116
DSBR (double strand breaks repair)
HR (homologous recombination)
133922116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
zf-CCHC
zf-CCHC_2
tRNA_anti-codon
BRCA-2_OB1
zf-CCHC_3
zf-CCHC_5
DUF223
DUF936
Motif
Other DBs
NCBI-GeneID:
133922116
NCBI-ProteinID:
XP_062223277
LinkDB
All DBs
Position
6:22081978..22086468
Genome browser
AA seq
926 aa
AA seq
DB search
MDAAQLTPGAVQAIADEAGPAAIQPVLQVVKLRLVTTKADNANSNSSSRFRMVLSDGAHS
LQSMLATALNPLVRDGTLRVGTIVHLNEFVCNTIQGKRIIIVVKLEILQSECTMIGSPKN
YEAKSLTKVQDPNIPTSAAQSNSRIYSGGPGMMGSSVAPRAEQAANKLSYSGPYNGAQGM
VGSSIGQTVEPGPSNVFTGGSYGAMSAQNTINANMVQPKSQQPLLNSHQNEMFAVPATGG
GFGPPGNTYGHPAQPSYQQLPPDCINRGPAAGNESTTHIVPIASLNRYRQNKWTIKARVT
AKTDLRYYTNSKGPGKVFSFDLLDAQGGEIRATCFNLAVDQFYDLIEVDKVYLISRGNLK
PAEKKYNHLNHEYEITLDASISSVEICSGDDNSIPRQQFNFQQISEIENMDNDAMVDLLG
VVTSVGPSDTIMKKNGTETQKRTLQLKDMSGRSVELTIWGNFCNVEGQQLQLQCDSGLNP
ILALKGVRVNDFGGRSVGTISSTQLKMNPDFPEAERLRQWYIIEGKTAACVPLSREMSNM
GRGDVRKTIAQINAENLGRSGKPDWITIKAAISEVRTESFYYPACPLMFNKKPCNKKAIQ
NGDGMWHCERCDKIFENCEYRYLVTFRIQDHTGTTFVTAFQEAGEQIFGCPAQELFLIRN
VNQDVALFTEIIEGVRWHQYLFKLRVREEVFNDEKHVKCSIVKAEKVDPLEESRILLGAI
DSLLLDGLGSNPGVQGAVITPNAGFTNSQGGHNVLTSNNAYTMNMGAANQFGRQGSIGGW
MSTPLSATQNVQTCSACGSSGHNAQNCPSGVDRQQPSAGGHFTGINYGSTAGNASSGLCF
KCNQPGHWSRDCPGQASGPQQQAYGKSVASGGFTGRNYGATAGNTWSDVCFKCNQPGHWS
RDCPGQSTGPRHQTYGNSMASGGYSR
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atggatgccgcgcagctgacgccgggcgcggtgcaggcgatcgcggacgaggcggggccg
gcggcgatccagccggtgctgcaggtggtgaagttgcgcctcgtcaccaccaaggccgac
aacgccaactccaactcgtcgtcacggttccgcatggtgctctccgacggcgcccactcg
ctacagtctatgctcgccactgccttgaacccactcgtcagggacggcactctacgcgtg
ggcaccatcgtccacctcaacgagttcgtgtgcaataccatccagggtaaaaggatcatt
attgttgtgaaactggaaattctgcaaagtgagtgcaccatgatcgggagccccaaaaac
tacgaagcgaaaagtttaactaaggtacaagaccctaacataccgaccagtgcagctcaa
agtaatagtagaatctattccggtggcccaggcatgatggggtcttccgttgctccaagg
gcagagcaggctgctaacaaactctcatatagtggaccctataacggtgctcaaggcatg
gtggggtcttctattggccagacagtagaacctggtcctagcaatgtgttcactggtggc
tcttatggtgcaatgtcggcacagaacacaattaatgccaacatggtacagccaaaatct
cagcagcctttgctgaactctcatcaaaatgaaatgtttgcagttcctgccacaggtggg
ggctttggccctcctggcaatacttacgggcaccctgcacagccttcatatcagcagctg
cctccagattgtatcaatcgaggccctgctgctgggaatgaatctacaactcatatcgtt
ccgattgcttcattgaatcggtaccggcagaataagtggacaatcaaggctagggtgact
gcaaagactgatctcaggtactacaccaactccaaaggtccaggaaaagttttctcattt
gatctccttgatgcacaaggcggagaaattcgcgcaacatgcttcaatttggcggttgat
caattttatgacctaattgaggttgataaggtgtacttgatatctagaggaaatcttaaa
cccgcagagaagaagtataaccatttgaaccatgagtacgaaataactctggatgcatca
atatcgtctgttgagatttgctctggtgatgataacagcatccctaggcagcagttcaat
ttccagcagatcagcgaaatagagaacatggataacgatgccatggttgatttacttggt
gttgttacatcagttggcccttctgatacaataatgaagaagaatggcactgaaacccag
aaaagaactcttcaactgaaagacatgtctggtcggagcgtggaattaaccatttgggga
aacttctgtaatgttgaaggtcagcagctgcagttgcagtgtgattctggtttgaatcct
atacttgctttgaaaggtgtccgtgtcaatgatttcgggggcagatcagtgggcacaatc
agttcaactcagttaaagatgaacccagactttcctgaggcagaaaggctgaggcagtgg
tacataattgaaggaaagactgccgcttgtgttcctttatctcgggaaatgtctaatatg
ggccggggtgatgtccgcaaaacgattgcacagatcaatgctgaaaacttggggcgatca
ggtaagccagactggatcactattaaggctgcaatttcagaagtacggactgagagtttt
tattatccagcttgcccgttgatgtttaacaagaagccatgtaacaaaaaggccatacag
aatggtgatgggatgtggcattgtgaaagatgtgataagatctttgaaaactgtgagtat
aggtacttggttacgtttcgaatccaagatcacaccggtactacctttgttactgcattc
caggaggccggtgagcagatatttggctgtccggctcaagaacttttcttgataagaaat
gtcaaccaagatgtcgcactattcaccgagatcatagaaggggtccgttggcatcaatat
ctattcaagttgagagtcagggaggaagtgttcaacgatgagaagcatgtgaaatgtagc
attgttaaagctgaaaaagtggatccattggaagagagtagaatccttcttggagcgatt
gacagccttctactggatgggttaggctcaaacccaggggtgcaaggcgctgttattacc
cctaacgcaggtttcaccaattcacaaggcggtcacaatgtgcttacctccaacaacgcc
tataccatgaatatgggtgccgcaaatcagtttgggcggcaaggaagcataggtgggtgg
atgtcaaccccactgtcagcgacacaaaatgtacagacttgcagtgcttgtggatccagt
gggcacaacgcacagaactgcccttctggtgtggataggcagcaaccatctgcaggtggc
cacttcacaggcattaactatggctctactgctggcaatgccagctcgggtttgtgcttc
aaatgtaatcagcctgggcactggtctagagactgtccagggcaggcttctggtccccag
caacaggcatatgggaagagtgttgcatcgggaggcttcacaggccgtaactatggtgct
accgctggtaacacctggtcggatgtgtgtttcaaatgcaaccagcctgggcactggtct
agagactgtccagggcaatcaaccggaccccggcaccaaacatatgggaatagcatggca
tcaggaggttacagtaggtaa
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