KEGG   Phragmites australis (common reed): 133922408
Entry
133922408         CDS       T10575                                 
Name
(RefSeq) probable histone deacetylase 19 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
paua  Phragmites australis (common reed)
Pathway
paua03082  ATP-dependent chromatin remodeling
paua03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:paua00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    133922408
   03083 Polycomb repressive complex
    133922408
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:paua03036]
    133922408
Enzymes [BR:paua01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     133922408
Chromosome and associated proteins [BR:paua03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     133922408
   HDAC complexes
    Sin3A-HDAC complex
     133922408
    BRAF-HDAC complex
     133922408
    REST complex
     133922408
    SHIP complex
     133922408
    MiDAC complex
     133922408
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     133922408
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    133922408
  Chromatin remodeling factors
   NuRD complex
    133922408
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 133922408
NCBI-ProteinID: XP_062223720
LinkDB
Position
6:complement(39357599..39365399)
AA seq 517 aa
MDPASAGSGGNSLPSVGPDGQKRRVCYFYDPEVGNYYYGQGHPMKPHRIRMTHSLLARYG
LLNQMQVLRPNLARDRDLCRFHADDYIHFLRSVTPETQQDQIRALKRFNVGEDCPVFDGL
YSFCQTYAGASVGGAVKLNHGLDIAINWSGGLHHAKKCEASGFCYVNDIVLAILELLKHH
ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDVRDIGHSKGKYYSLNVP
LDDGIDDESYQSLFKPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVKY
MRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGQELEDKMPVNEYYEYFGPDYTLHVAP
SNMENKNTRQQLDDIRSELLDNLSKLRHAPSVQFQERPPDTELPEPDEDQEDPDERHDPD
SDMEMDYHKPLEESTRRSILGIKVKREFTENEAKLQDGSRGTSEHRGLEPIVEDIDSSKQ
APQADANAMAIDEPGNVKNEPESSTKLPDQATMYHKP
NT seq 1554 nt   +upstreamnt  +downstreamnt
atggaccccgcgtcggcgggatccggcggcaactcgctgccgtcggtcggccctgacggg
cagaagcggcgggtgtgctacttctacgacccggaggtgggcaactactactacgggcag
ggccacccgatgaagccgcaccgcatccgcatgacgcactcgctgctggctcgctacggc
ctcctcaaccagatgcaggtgctccgcccgaacctggcccgggaccgcgacctctgccgc
ttccacgccgacgactacatccacttcctccgctccgtcacgcccgagacgcagcaggac
cagatccgcgcgctcaagcggttcaacgtcggcgaggactgccccgtcttcgacgggctc
tatagcttctgccagacctacgcgggcgcgtcggtgggcggggccgtcaagctcaaccac
ggcctcgacatcgcaatcaactggtcgggaggactgcaccacgcgaagaagtgcgaggcg
tccgggttctgctacgtcaacgatatcgtgctcgccattctcgagctcctcaagcaccac
gagagagttctatatgttgatattgatatccaccatggtgatggagttgaggaggctttc
tacacaactgacagagttatgacggtctcattccacaagtttggggattatttcccagga
acaggggatgtccgtgacattgggcattcaaaggggaagtattactcactgaatgttccg
ctggatgatgggattgatgatgaaagctaccagtccctgttcaagccaatcatgggcaaa
gttatggaggttttccgccctggtgcagttgtgcttcaatgtggtgctgattccttgtct
ggggataggttgggttgcttcaatctctcaatcagaggtcatgcagaatgtgtgaagtac
atgaggtctttcaacgttccattgttgcttctcggtggtggtggatataccataagaaat
gttgcacggtgttggtgttatgagactggagttgcgcttggtcaagagcttgaagacaag
atgcctgtcaacgagtactacgaatacttcggtccggattacactcttcatgttgcacca
agtaatatggagaacaaaaatacacgacaacaactggatgatataagaagcgaacttctg
gataatctttcaaaacttcgacatgctcctagtgtccagtttcaagagcgacctcctgac
acggagttacctgagccagatgaagatcaagaggatccagatgaaaggcacgatcctgat
tctgatatggaaatggattatcacaagcctttggaagagtcaacaaggagaagcattcta
ggtatcaaagtcaagagagaatttactgaaaatgaggccaaacttcaggatggtagcaga
ggtacatctgaacacagagggctggaaccgatagtagaagacattgattcctccaagcaa
gctcctcaggcagatgcaaatgcgatggccattgacgagccaggcaatgtcaagaatgaa
ccagagagctcaactaagttgccagaccaagcaactatgtaccataagccataa

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