Phragmites australis (common reed): 133922483
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Entry
133922483 CDS
T10575
Name
(RefSeq) SWI/SNF complex subunit SWI3B-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
paua Phragmites australis (common reed)
Pathway
paua03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133922483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133922483
03036 Chromosome and associated proteins [BR:
paua03036
]
133922483
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133922483
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
133922483
PBAF complex
133922483
GBAF(ncBAF) complex
133922483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
SWIRM-assoc_1
Zn_ribbon_Nudix
Motif
Other DBs
NCBI-GeneID:
133922483
NCBI-ProteinID:
XP_062223828
LinkDB
All DBs
Position
6:complement(40599986..40604745)
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AA seq
486 aa
AA seq
DB search
MATATTTAPAGTASFRPAPPQPPPSAPAAPPRIFTTGAVKSEATPTPTSTAAAAVGAEEP
SHIITVPSYSAWFSYDSIHDTERRLLPDFFEGEAAAASGCRGPDAYKYYRDALVRRFRAR
PGRRLTLTEARRGLVGDVGSVRRVFDFLEEWGLINYGALPSGSKQAKEKREEAAPQPSVP
AGSTTPRKLCTGCRTVCGLAYFACEKADISLCARCFVRGNYRPGLTTADFKRVEITEDAK
SDWTDKETLHLLEAVLHYGEDWKKVSEHVGSRSEKDCIARFIRMPFGEQFMGPKEDKMQF
ENDDDINDDSGADISKRLRLTPLADASNPIMAQVAFLSAIVGSDAASAAAHAAISAQSRV
DLNDSEIDSSMNSSREEESSCTNGLLVNDLLKEAAANARGQLQMERSNTEQSLSDIVDVQ
MKEIQDKICRFEQEEMLMEKERQQLHCLRDLLFADQLAVMQHQRRPLAVPTESKDDEKPK
PMISIS
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgcgacaacgacggcgccggcgggcaccgccagtttcagaccggcacctccg
cagccgccgccctcagcgccagccgctcctccgaggatcttcaccacgggcgccgtcaaa
tcggaggccactcccacccccacgtccaccgccgccgctgcagtcggagcggaggaaccg
tcccacatcatcaccgtcccgagttactcagcgtggttctcgtacgactcgatccacgac
acagagcgtcgcctcctgccggatttcttcgagggggaggccgcggctgcgtccgggtgc
cggggccccgacgcgtacaagtactaccgcgacgcgctggtgcggaggttccgtgcgcgg
ccggggcgacggctcacgctcaccgaggccaggcggggccttgtcggcgacgttggctcc
gtccgccgcgtctttgacttccttgaggagtggggactcatcaactatggtgctttgcca
tccgggtcgaagcaggcaaaagagaagagggaggaggctgcgccacagccttcggtgcct
gctgggtcaacaacacccaggaagctttgcactgggtgccgcaccgtttgtgggcttgct
tacttcgcctgcgagaaggcagatataagtctctgtgctaggtgctttgtacgtggtaac
taccggccaggtctgactacagcagacttcaagagggttgaaattaccgaagatgcaaaa
tcagattggactgacaaagaaacccttcacttgcttgaggctgtcttgcattatggtgaa
gactggaaaaaagtgtctgaacatgttggtagtcgatcagagaaagattgcattgctaga
ttcatccggatgccttttggagaacagttcatgggacccaaggaggataaaatgcagttt
gagaatgatgacgacattaatgatgactcaggagcagatatctcaaaacgactacgcctc
acaccactggcagatgcaagcaatccaattatggcccaggttgcattcttatcggctatt
gtgggttcagatgctgcttcagctgcagctcatgcagctatatctgcacaatcccgggtt
gatttaaatgacagcgagattgattcttcaatgaacagtagcagggaagaagaatcgtct
tgcacaaatggccttttagtcaatgatttactcaaagaggccgctgctaatgcacgaggg
caacttcagatggaacggagcaatacagagcaatctttatccgacatagtagatgtccag
atgaaggaaatccaagacaaaatatgccgttttgaacaggaggagatgctgatggagaaa
gagcgacagcagctccattgtttaagggatttgcttttcgcagatcaactggcagtcatg
caacatcagcgcaggcccctagctgtaccgaccgagagcaaagatgatgagaagccaaaa
cctatgattagcataagttga
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