Phragmites australis (common reed): 133922777
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Entry
133922777 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133922777
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
paua Phragmites australis (common reed)
Pathway
paua04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
133922777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
paua04131
]
133922777
Membrane trafficking [BR:
paua04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
133922777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
VPS8_N
TPR_VPS8_2
Beta-prop_EML_2
WDR55
TPR_Vps41
WD40_CDC20-Fz
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR5
Clathrin
Beta-prop_WDR3_1st
ANAPC4_WD40
Beta-prop_HPS5
WD40_WDHD1_1st
WD40
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_THOC3
WD40_Gbeta
zf_RING_Vps8
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
zf-RING_Vps41
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
133922777
NCBI-ProteinID:
XP_062224241
LinkDB
All DBs
Position
6:complement(44397301..44410788)
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AA seq
1914 aa
AA seq
DB search
MTTVSTMSTSSSQPPPPRQELDLDAFLPSSPTSSTASDADHRRTVDDLLLLLSSSDSDES
DSNESKPNPSANSKALARIQALAPPPKPSPSPSPSPSASPSPRRFASASPSETLSSLVSR
TFSSNGASSSSSKPLPSLFRGVRPSPKPGAALAAAAAASRAVLTPHAAAIKSRRSVSAPV
DKLLDEGSGSKASEELPSTGSLEAEVEEKGNAEVVAAPTEQTAGGSRDEELEEEKHEEVG
IEENSEPRKLVEVGSLDSVGAEDFSVRERVEDDNLAETDQVGNQIGVVYGKNEDDQIGDD
NSVELSQGVDSVVAVSKESFDDDQEVERSDSVVEEQVESGSIIDWVIEERMEPLEISRKA
EKKLKVPMKPLEWAEELEKRQASFGQHWEEGAAAQPMQLEGIGKGPPAIGYMQIEMDNPV
TRAMASPSFRPDHGSPQVLAVHRNYIATGMSKGAVIVIPSKYSIHQADDTDAKMLVFWNQ
GEKTQSPVTAMCFNQQGDLLLVGYGDGHITIWDVQKAAAAKVMYGEHTAPVVHACFIRQS
KAITGDSKGVVLLHTFSIIRVLNRLTVKGTQHLFDGNTGIVLSACPLLLDESFGFSNSSS
QGNQITSSGGGFGSMMGGVVGVDSGWKFFNESSSPMEDGVVVMFVMHQHALVVRLRTNID
HVDHIETFSKPDGAREGSIAYAAWKYTASLSDLSSLDEERVSWLALAWDRKVQVSKFVKS
KIVKHKEWKLDSAAIGVAWLDDQMLVVLNLRGQLCLFSNDGSELRRTTFVPDGLVFDDTI
LHHAHFSNRFGNPERHFNNSVAVRGATVYILGPTFLTVSRLLPWKERIEALKRAGDWMGA
LDMAMRLYDGQTQGVVDLPRTVDSIREAIMPYLVELLLSYITYVFEYISIALSNHTGKGG
ESDGLIEADRSLLTQREEQFARVGGVAVEYCVHIGRNDILFDTVFSKFVAEQSGGMFLEV
LEPYILKDMLGSLPPEIMQALVEHYSGKGWLQRVEQCILHMDISSLDFNQVVRLCREHGL
YGALIYLFNQGLNDFRTPLEELLSVIQNTNIKDAASTCYRMLVYLKYCFQGLAFPPGHGI
IPQSRLHSVREELVQFLLEESKSLTSEVFKGFNASCGKCPNICYLLWMDTEATLEVLKCA
FAQDSFEPRDDPSSTIDASVSEDEDGIDAGMSQNSMVQNAVDTIIDIVGLENEVIRSIVM
GTDESKIWPSEGEFGYLIEFVSLFVSRKRANASKRVVMHILSYLTSSYDDTRTPTRKEKE
VLQLFNAVPQNDWNSDFVLSLCLDAHFHQACGLIFTARDQNLAALDSYMEDKEEPFHAFI
FINKRLFELADDEALSFRSTVISRFPELVKLSRKCAFVLVIDHFHDEIQQILAELHSDRH
SLFLFLKTAVEVHLSGKLDFNELSVRNNQTIELQYSSSYLEDYLQRLLNLPKLDHNPVSI
NDELVELYLELLCQYERRSVLKFLETFDSYRLERCLHLCLDYGVTDAAAFLQERVGDVGS
ALALVLAGLDEKINLFISSVENTFSGVASKNISETKQPDIVLEMSEAYPVLDALHASIGL
CQRNSQRLDPEESQSIWFKLLDSFSEPLKKLYGNKDIIEKCAGSKGSEKPKEHPKRKGLS
QQVRILAKQRCLTALRKVFSQFVGEIIEAMAGYIPLPAIMAKLLTDNGSQEFGDFKLVIH
RMLSMYLYERRILETAKSVIEDDSFYTLSLLKRGVCHGFAPQTFVCCICNCSLSKEDANS
AIRVFNCGHATHLHCESEQSRLSNRESKDGCPICLSTNNTQARNKSPISENGQVNYSGAE
NEVSHGIHHIHEADHAERSHGLQHMSRYEILNNLQKAQRSFHIETVPPLKLSPPAMYHEK
IQKRAILVGEPSKHSFRSQNPQKIWQMKEQKSKQTGNQLQQKSTVLRSQKSQVS
NT seq
5745 nt
NT seq
+upstream
nt +downstream
nt
atgacgacggtatccaccatgtcgacgtcgtcgtcgcagccaccgccgccgcggcaggag
ctcgacctagacgctttcctcccatcctctcccacctcctccacagcatccgacgccgac
caccgccgcacagtagacgacttgctcctcttactctcctcttcggattccgacgagtcc
gattccaacgaatccaagcctaaccccagcgccaacagcaaagccctagcccgaattcaa
gccctggcgccgccccctaaaccctcgccgtcgccttctccttccccatccgcgtccccg
tcccccaggagattcgcatccgcctcgccgtcggagaccctctcttcactcgtctcgaga
accttctccagcaacggcgcctcgtcctcttcgtcgaagccgctcccctcgctctttcgt
ggagtccgccccagccccaagcccggcgccgcgctagccgctgctgccgcagcatcccgc
gcggtcctcaccccgcacgccgctgccattaagtcccgtcggtcagtctcggcgcccgtc
gataagctcctggatgagggaagtggctccaaagcctccgaggagctcccttccactggg
agcttggaagcagaagtagaagaaaaggggaatgcggaggtggttgctgcgccgacggaa
caaactgcaggtgggagtagggatgaggaattggaagaggagaaacacgaagaagtggga
attgaagagaattctgagcctaggaaactggtggaggtaggttccctggattctgtaggc
gcggaggatttcagtgtgcgtgagcgagttgaagatgacaatttggcggaaactgaccaa
gttgggaatcaaattggggttgtctatggaaaaaatgaggacgaccaaataggagatgat
aattctgtggaattaagtcagggtgtggattcagttgttgctgtttccaaggaaagtttt
gacgatgaccaggaagttgaaagatccgacagtgtcgtggaggagcaagtggaatctggg
agcatcatcgattgggtgattgaagagaggatggagccgttggagatcagcaggaaggct
gagaaaaagctgaaggtgccgatgaaaccattagagtgggcagaggagcttgagaagagg
caggcctcatttggacagcactgggaagagggtgcggctgcacaaccgatgcagctagag
gggattggaaagggcccaccagctattggttacatgcaaattgagatggacaacccagta
actcgtgccatggcctcaccttcatttaggccagaccatggctctccccaggtgctggca
gttcataggaactatatagcgacgggcatgtctaaaggagctgtcattgtcattccaagc
aaatactccatccatcaagctgatgatacagatgcaaagatgctggtcttttggaaccaa
ggtgagaagactcaatcaccagtgactgccatgtgctttaaccagcaaggggatcttctg
ctagtaggatatggtgatggtcacatcacaatttgggatgtacagaaagctgcagcagca
aaagtcatgtacggtgagcatacagcaccagtagtgcatgcttgttttatccgtcaatcc
aaagccatcactggtgattcaaaaggagtagttctattgcacacattttccattatccgt
gtactcaatcgcttgactgtcaagggaacccagcacctttttgatggaaatactggaatt
gtgctctcagcctgccctcttctattggatgaatcctttgggtttagcaactcatcttcc
cagggaaaccaaataacttcctctggtggtggttttggcagcatgatgggaggtgttgtt
ggagtagattctggatggaagtttttcaatgaaagttcttctccaatggaggatggtgtt
gtagttatgtttgttatgcatcaacatgctcttgtggttagactccgtaccaatattgac
catgttgatcatattgagaccttctctaaaccagacggggctagagagggctccatcgct
tacgccgcatggaaatacacagcatccttgagtgatttatcatcactagatgaagaacga
gtatcatggcttgcacttgcatgggaccgtaaagtgcaagtgtcaaagtttgttaaatca
aagatagttaaacacaaggaatggaagcttgatagtgcagcaattggtgttgcctggtta
gatgatcagatgttagttgtccttaatttgagaggccagctctgtttgttctccaatgat
ggcagtgagcttcgcagaaccacctttgttcctgatggtcttgtgtttgatgacaccata
ctgcaccatgcacatttttctaacaggtttggtaacccagagaggcattttaacaattcg
gttgcagtaagaggtgctacagtgtatattctcgggccaacctttctcacagtttcccga
cttcttccatggaaagaacgcattgaagcactaaagagggctggcgattggatgggtgca
ctggacatggcaatgaggctttatgatggtcagacacagggtgtcgttgatctcccgaga
acagttgattctattagagaagccataatgccttacttagtagagttgctgctatcatat
ataacttacgtctttgaatatatttcaattgcattatcaaatcataccggaaaaggggga
gaatcagatggcttgatagaggccgatagatctctgttgacacaaagagaggaacaattt
gctcgtgtaggaggggttgcagtggagtattgtgtccacattggacgcaacgacatcctt
tttgatacggtcttctctaagttcgttgctgaacaaagtggaggtatgtttctggaggta
ctagagccctatatattgaaggatatgcttggttctttgccccctgagattatgcaagct
ctagtagagcattatagtggcaaaggatggttgcagcgagtcgaacaatgcattcttcat
atggatatttcttcattggattttaatcaggtagtcagactgtgccgcgaacatgggtta
tatggggcacttatttatttatttaatcaaggcttgaatgatttccgtacacctctagag
gaacttctatcagtcattcagaacaccaatataaaagatgctgcttctacttgctacagg
atgcttgtttatctgaaatattgctttcagggcctggcatttcctccagggcatgggata
attccccaatcccgccttcattcagtgagagaagaacttgttcaatttctgcttgaagag
tctaagtcgctcacttctgaagtgtttaagggtttcaatgcttcttgtggaaaatgccca
aacatatgctatctgctatggatggatacagaagctactttggaagttctcaaatgtgct
tttgcacaggacagttttgaacctagagatgacccttctagtactattgatgcatctgtc
tcggaggatgaagatggtattgatgctggaatgagtcaaaatagtatggtacaaaatgca
gtggacaccatcatagatattgttggtttggaaaatgaggtgattcggtccattgttatg
ggtactgatgagtccaaaatttggccttcagagggggagtttggttatctaattgagttt
gtgtccctttttgtctcccgcaaaagggctaatgcatctaaaagagttgttatgcacatt
ctttcttatctcacttcgtcatatgatgatacaagaacaccaactcggaaagaaaaagaa
gtccttcaactcttcaatgcagttccccaaaatgactggaattctgattttgtcttgagt
ctctgtttagatgctcattttcatcaggcctgtggcttgatatttacggccagagaccag
aatttggctgctttggatagttacatggaggataaagaggaaccattccacgcttttatc
ttcatcaataaaagattattcgaattggctgatgatgaagctttgtcatttcgttccaca
gtaatatctcgttttcctgagctagtcaagctaagcaggaagtgtgcatttgtcttagtt
attgatcatttccatgatgagatccagcaaatattggcagagcttcattctgatcgacat
agcctctttcttttcttgaaaactgctgttgaagtacacttgtcaggaaaacttgacttc
aatgagcttagtgtcagaaacaatcaaacaattgaacttcagtactcttccagttacctt
gaagattatctgcagaggctattaaatctccccaagttagaccacaatcctgtttccatc
aacgatgagttagttgaactttatctggagcttttgtgccagtatgagcggaggtctgtt
ctgaagtttctggagacttttgacagttacagattggagcggtgtttgcatctttgtcta
gattatggagttacagatgctgctgcatttttgcaagagagggttggtgatgttgggagt
gcccttgcacttgttctagctggacttgatgagaaaataaacctatttatctcttccgtg
gaaaatactttttctggtgttgcatcaaaaaatatctccgagacgaagcaaccagacatt
gttctagaaatgagtgaggcttatcctgtgcttgatgcattacatgcctccattggattg
tgccaaaggaattcacagcgcctggacccagaggagtctcagtccatttggttcaaattg
cttgactccttctcagagccactgaaaaaattgtatggaaacaaggatataattgaaaaa
tgtgccggatccaaggggagtgaaaaaccaaaagaacatccgaagcgaaaaggactctca
caacaagtgaggattttagctaaacaaaggtgcttgactgctctgcggaaagtattttca
caatttgtcggagaaataatagaggccatggctgggtatatacccctaccagcaatcatg
gcaaaactattaaccgacaatgggagtcaagagtttggtgatttcaaacttgtgatacat
agaatgttgtctatgtatctttacgaaagaagaatactggaaacagctaagtcagtaatt
gaggatgactcgttttataccttgagcttactaaagagaggagtttgccatggatttgct
ccgcagacttttgtatgttgcatatgcaactgctcactttctaaagaagatgcaaattca
gccatacgggtgttcaattgtgggcatgcaacacatcttcactgtgagtctgagcaaagc
agattatccaatagggaatccaaagatggatgccctatctgtctctcaacgaacaataca
caagcccggaacaaatcacctatatctgagaatgggcaagtgaattattctggggctgaa
aatgaagtatcacatggcatccatcacattcatgaagcagatcatgctgagagatctcat
gggcttcaacatatgtcacggtatgaaatactgaataatcttcagaaagcacagaggtcc
tttcacatagaaactgtacctccattgaaactttcaccacctgctatgtatcatgaaaag
atacagaagagggccattttggtgggggaacccagcaaacattcatttagaagtcaaaac
ccccagaaaatatggcaaatgaaggaacaaaaatcaaaacaaacagggaaccagcttcag
caaaagtcaaccgtactccgttctcagaaaagtcaagtgtcgtag
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integrated database retrieval system
