Phragmites australis (common reed): 133922839
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Entry
133922839 CDS
T10575
Name
(RefSeq) WD repeat-containing protein RUP2-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
paua Phragmites australis (common reed)
Pathway
paua04120
Ubiquitin mediated proteolysis
paua04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
133922839
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
133922839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
paua04121
]
133922839
Enzymes [BR:
paua01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133922839
Ubiquitin system [BR:
paua04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133922839
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
133922839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_NOL10_N
SepZ
Motif
Other DBs
NCBI-GeneID:
133922839
NCBI-ProteinID:
XP_062224328
LinkDB
All DBs
Position
6:44937487..44939210
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AA seq
400 aa
AA seq
DB search
MSNPSSPSSSAAQHQDPLHQQELAAGASDDAGIIVPGVAAGDDELSPPRCEWEFRLARTV
PSTALPGASDAIGSVDFDPTGRLLATGGIARKIRMYNVTSLLDSSATASGAGPAACICVP
AKLSSVRWRPCASVVGCGDYDGVVTEYDVERGVASWERDEHAGRRVWALDYAPGATMAAS
GSDDRTAHVWDPRAPSAGWTTARAGGAVLCVEFDPSGGPQLAVGSADRRAVVYDVRALGR
GAVAWMDGHGRAVTYVRWAGAGAGAGRRVVTSAADGTHRLWEWGPGEELAREVRSYSGHA
SARSFVGMGVWRGAGLVASGSESNHVFVYDLRWAKPIWVHPFCGAHLPVSNVGGGGFVSA
VAWRQGGDLHGGALVAGGSDGVLKMFTCQRRKAEEADGDH
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatccctcctccccctcttctagcgccgcacagcaccaagaccccctacaccag
caagagctagctgccggagccagcgacgacgccggcattattgttcccggtgttgctgcc
ggcgacgacgagctgtcgccgccacggtgcgaatgggagttccggctggcgcgcaccgtg
ccgtccaccgcgctgccgggggcgtccgacgccatcggcagtgtcgacttcgaccccacc
ggccgccttctcgccaccggcggcatcgctcggaagatccggatgtacaacgtgacctcg
ctgctggatagcagcgccacggcttctggcgccgggcctgccgcgtgcatctgcgtgccg
gccaagctgagcagcgtgcgatggcggccctgcgcgtcggtggtggggtgcggcgactac
gacggcgtggtgacggagtacgatgtggagcgcggcgtggcgtcgtgggagcgcgacgag
cacgcgggccgccgggtgtgggcgctggactacgcccccggcgcgacgatggcggcatcc
gggtcggacgaccgcacggcgcacgtgtgggacccgcgcgccccctcggcggggtggacc
acggcgcgcgccggcggggccgtgctgtgcgtggagttcgacccgtccggcgggccgcag
ctggcggtgggctctgcggaccggcgcgcggtggtgtacgacgtgcgcgcgctggggcgc
ggcgcggtggcgtggatggacgggcacgggcgcgcagtgacgtacgtgcggtgggcgggg
gccggggccggggccgggcggcgggtggtgacgtcggcggcggacgggacccaccggctg
tgggagtgggggcccggcgaggagctggcgcgggaggtgcggtcgtacagcggccacgcg
agcgcgcggagcttcgtggggatgggggtgtggcgcggcgcgggcctcgtggccagcggc
tccgagtccaaccacgtcttcgtctacgacctcaggtgggccaagcccatctgggtacat
ccattctgtggggcccacctgccagtcagcaacgtgggtggaggtgggtttgtcagcgcg
gtggcatggcgacagggcggcgacctccacggcggggcgctggtcgccggcgggtcggac
ggcgtgctgaagatgttcacgtgccaacgaaggaaagcagaggaagcggacggcgaccat
tag
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integrated database retrieval system
