Phragmites australis (common reed): 133922870
Help
Entry
133922870 CDS
T10575
Name
(RefSeq) protein transport protein SEC16A homolog isoform X1
KO
K20353
COPII coat assembly protein SEC16
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
paua04131
]
133922870
Membrane trafficking [BR:
paua04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
133922870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
PCF11_RFEG_rpt
Motif
Other DBs
NCBI-GeneID:
133922870
NCBI-ProteinID:
XP_062224378
LinkDB
All DBs
Position
6:complement(45203363..45210621)
Genome browser
AA seq
1511 aa
AA seq
DB search
MASSSSFGPDEQTDADFFDKLVDDDDDNHLSTAPAPVPAKDGHDGLPEPALARAVSGLSL
IDDGPGAPEPPAPATEAPPPEGGSPGSGKVGGVHTAVKQAQWASFGGDADDGVDPFADLL
GGAGEDGLFGSMAGNQTLGSSVVGTVGASDRGFFGGNQSLAAEVSDQDFFAGSSNQNADG
QLEQSGSGAVDSTDPKYLETMYPGWKYDEATQQWYQVDSFDTTANAAQVDHSSENVQQQQ
LDASYLQNSAHAALETIAEEGATTGDVSSWGQGGATEYPPNMMFYAKYPGWYFDTNTQQW
HSLESYQQAVMQSGTASAVQNGANHGVVAASGGMDYNVKQTEDLAVHNQVAQHNSFTNGY
PHQSQWQTDAFGNTMQSESITDSSQTSSFYGFDQHANAGTISSSTSHQVGFNTVETASNV
GHKGLDLSSLQSGYNSTDSQQSSYKVFEHSTGYQAGYKGFEPATGHQTSHQVFERSTGIQ
GGYKAFEPSMGNQSGYKAFEPSTGHHSGYKGFVPSTGHQAGFKGSEASTVHQVSYKGFEP
SSAQQAGYMGFQPSSGHQSNYIGFETSTNQGYGDVNGIVNRQGFVPTGSIYHSQSQANAN
PQGHLSNSYLGTENSMNFTQQQFPGANASQLQFGHSPNDGRSSAGRPPHALVVFGFGGKL
IVMKETSSMTTNFNSGNQENSSATVSVLNLSEVVVNKVDPSSITNSGALSYFHALCRQPV
PGPLVGGSAASKDVNKWLDEMITLYESSASDFQRGDPCKLLISLLKILCQHYGKLRSPFG
SDPSHEETDGPEMAVTKLFSSCKRSSVHMGGYGSVVRCMKNIPSESQMQAVAQEVQNLLV
CGRRKEALQCAQGGQLWGPAIILALQLGDKFYVDTVKKMAHSHFVSWSPLRTLCLLIAGQ
PADVFNVENNFKSDYGTLGASHQPMEPGPNGMLDDWEENLAIITANRTKGDDLVITHLGD
CLWKEKNEAAAAHSCYLVAELNIDPYSESARLCLIGADHLKCPRTFVSPEAIQRTEVYEY
AKVLGNSQYILLPFQPYKLIYAYMLAEVGRVSDSLRYCQASMKVLKASGRAPELEAWKQL
FSSLEERIRTHQQGGYGTNLAPTKLVGKIFTSLDKSISRMMGTPSAPLPPLPQGSVSDRE
TYSAPAASKFVNSQSVMAMSSLMPSASMQSMSEIAENSGGTGRKIAHNRSVSEPDFGRTP
KQGVSGSGSSRFGWLGSTLQKTMGLVSKSHRQAKLGDQNKFYYDEKLKRWVEEGAAIPAE
EPPLPPPPTKSSFQNGMPDHKLNGPMSGSHAPNGVVEWKSNSSEQGLGMPPIPRSQNQFS
ARGRMGVRSRYVDTFNKAGASGAVPLYNKPAAPSVTPPAGAKFFVPTAAAAAADQIPHQA
AEIQSETVHQDERSASPPAETSFSSPPPSTQFLAAMPSTIHRQSSMDNISTPYQGSGVSS
GSDSSSFSRSRAASWSGTYSEQFSAFAGARSPDGQTTPSPLMPGKPSHSRSNSNSSVQFN
GLTEDLHEVEL
NT seq
4536 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcctcctccttcggccccgatgagcagaccgacgccgacttcttcgacaag
ctcgttgacgacgacgacgacaaccacctctccaccgcgcccgcccctgttcccgccaag
gacggtcacgacggcttgccggagcccgccttggctcgagccgtatccggcctcagccta
atcgatgacgggcctggggcgcccgagccacccgctcccgccacggaggcgccgcctccg
gagggtgggtcgccgggttcagggaaggtcggcggcgtccacactgcggtcaagcaggcg
cagtgggcctcctttggaggtgacgccgacgatggggttgatccattcgctgatctcttg
ggaggtgccggcgaggatggccttttcggcagcatggccgggaaccagaccctggggagc
tcggtggttggtactgtgggggcctcagatcgcggcttcttcggtgggaatcagagcttg
gccgctgaggtgtcggatcaggatttttttgcgggaagctcaaatcagaatgctgatggg
cagctggagcagagcggcagtggtgctgtggattccacggatcccaagtatttggagacc
atgtaccctgggtggaagtacgatgaggcaacacagcaatggtaccaggttgacagtttt
gatacaactgcgaatgctgcccaggtggaccatagtagtgagaatgtgcagcagcagcag
cttgatgcttcatacctacagaattcagcgcatgcagcgctcgagacaattgctgaggag
ggtgccaccacaggcgatgtctcaagttggggacaggggggcgccacggagtacccaccc
aacatgatgttctatgcaaaatacccgggttggtactttgataccaacacccagcagtgg
cactcacttgagtcataccagcaggctgtcatgcagtctgggacagctagtgcagttcag
aatggtgcaaaccatggcgttgttgcggcttctggtgggatggattataatgtcaaacaa
accgaggatcttgctgtccacaatcaggtggcccaacataactcattcacgaatggttac
cctcatcagagccaatggcagacggatgcatttggtaacactatgcaatctgaaagtatt
acagacagtagccagacaagtagtttctatgggtttgatcagcatgcaaatgctgggact
atcagttcctctacaagccatcaggttggttttaacacagtcgaaactgcttcaaatgtt
ggacacaagggcttagacttatcaagtcttcagagtggttataactcaactgacagtcaa
caatccagttacaaggtgttcgaacattcaacaggttatcaggccggttacaaagggttt
gaacctgcaacgggtcaccagaccagtcaccaggtgttcgaacggtccacgggtattcag
ggaggttacaaggcatttgaaccttccatgggtaatcagagtggttacaaggcatttgaa
ccttccacgggtcaccatagtggttacaaggggtttgtgccttccacgggtcaccaggct
ggtttcaaggggtccgaagcttccacagttcaccaggttagttacaagggatttgaacct
tcttcagctcaacaggctggttacatgggattccaaccttcttcaggtcaccagtctaat
tacataggatttgaaacttccacaaaccagggttatggtgatgtcaatggtatcgtgaat
agacagggctttgtcccaacggggagcatttaccacagccagagtcaagcaaatgcaaac
ccacaagggcacttgtcaaacagctatttgggtactgagaattccatgaacttcactcag
caacaatttccaggtgcaaatgcttcacaattgcaattcggtcactcccctaatgatggg
aggtcatcagctggacgaccaccacatgcccttgttgtttttggatttggagggaagctt
atagttatgaaagaaaccagctcaatgaccacaaactttaacagtggaaatcaggagaat
tctagtgccacagtgtcagttcttaatctatcagaggttgttgtcaataaagttgatccg
tcaagcatcactaatagcggtgcacttagttacttccacgctttatgccgtcaacctgtt
cctggtcctctggtcggtggaagtgctgcatcaaaggatgtgaataaatggcttgatgag
atgattaccttgtacgaatcttcagccagtgatttccagagaggtgatccttgtaagttg
cttatttcattgctgaagatactgtgtcaacactatgggaaattgcgctcaccttttggg
tccgacccatcacacgaggagacagatggtccagagatggcagtaactaagctattttca
tcgtgtaagagaagtagtgttcacatggggggttatggatctgttgttcgctgcatgaaa
aatattccctcggaaagtcagatgcaggctgttgcacaagaggtccaaaatcttctagtt
tgtgggagaaggaaagaggcccttcagtgtgcccagggaggtcaactttggggacctgca
atcatactggctttacaacttggtgacaagttttatgtggatacagtgaagaaaatggct
cactcccattttgtatcttggtcaccactgcgaacattgtgtcttctcattgctggacaa
cccgcagatgtctttaatgtagagaacaacttcaaaagcgactatggtacactaggagca
tcccatcaacctatggagcctggtcctaatggcatgttggatgattgggaggagaatttg
gctattataactgcaaacaggacaaaaggtgatgatctagtaataacccatcttggtgat
tgcctttggaaagagaaaaatgaggctgcagctgctcattcatgctatttagttgctgaa
ctaaatattgatccgtactctgaaagtgcaaggctatgcctcatcggtgcagaccacttg
aaatgtcctcgaacatttgtcagccctgaagccattcagaggacagaagtttatgaatat
gcaaaggtgcttggtaattctcagtatatcctgctaccctttcagccatataagttgata
tatgcatatatgcttgctgaagtgggaagggtttctgattctttgaggtattgccaagcg
tctatgaaggtgctgaaagcctctggccgtgcccctgaattggaggcatggaaacaatta
ttttcctccctggaagagaggatacgcactcatcagcagggtgggtatggtacaaatctt
gccccaacaaaactagttggaaagattttcacctcacttgataaatctatatcccgcatg
atgggtacaccatctgcaccacttccacctttgccacagggctccgttagtgatagagag
acctactctgcacctgcagcttcaaaatttgtaaatagccaatcggtaatggccatgtca
tcgttaatgccgtccgcttcaatgcagtctatgagtgagatagcagagaatagtggtggc
actggcaggaaaattgcacacaacagaagtgtttctgagccggactttggcagaaccccg
aaacagggtgtgtcaggatcaggtagttcccgatttggttggttaggctccacgctgcag
aagacaatgggattggtgtcaaaatcacaccgccaggcaaaattaggggaccagaacaag
ttttactatgatgaaaagctgaagcggtgggtggaagaaggtgctgcgattcctgccgag
gaaccccctctccctccacctccaacaaaatcatctttccagaatggtatgccggaccat
aagctgaatggtcccatgagtggaagccatgctcccaatggggtcgtggaatggaaatca
aattcttcagagcaaggtttggggatgccaccaatcccacgtagccagaaccagttttct
gctcgtggacggatgggtgtccggtccaggtacgtggacacgttcaataaggctggtgcg
tccggagcagtgccattgtataacaaaccagctgctccatctgtgacaccaccagctggt
gccaagttcttcgtgcccactgcagcagcagctgctgcagatcagatacctcaccaagca
gcagagatacagagcgaaaccgtccatcaggatgagcgttcagcctcaccgccagcagaa
acgtcattttcttcacccccaccatcgacgcaatttttagcagcaatgccatcaacaatt
catcggcaatcgagtatggacaacatctccactccttaccagggttcgggggtgtcatca
ggaagcgacagcagctcattctcaagatcacgagctgcgtcatggagtggaacatactct
gagcagttcagtgcttttgcgggcgctagatcacccgatggacagaccacgccttcgcca
ctcatgcctggcaaaccctctcatagtcgttccaacagcaactcatctgtgcagttcaac
ggattgacagaggatctccatgaggtcgagctctga
DBGET
integrated database retrieval system
