Phragmites australis (common reed): 133923961
Help
Entry
133923961 CDS
T10575
Name
(RefSeq) E3 ubiquitin-protein ligase UPL3-like isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
paua Phragmites australis (common reed)
Pathway
paua04120
Ubiquitin mediated proteolysis
Brite
Enzymes [BR:
paua01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
133923961
Ubiquitin system [BR:
paua04121
]
Ubiquitin ligases (E3)
HECT type E3
133923961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133923961
NCBI-ProteinID:
XP_062225272
LinkDB
All DBs
Position
7:complement(9323358..9334236)
Genome browser
AA seq
1881 aa
AA seq
DB search
METRSRKRAEASSSSTTSSRSSKRSRPNPNPNPNPPAASSNPAPAPPRTRRSAAVSPLSA
SAPCPPMDSSGDNNPNPNPPPRRRGRPSNADKGKEQQQQEPSERSRVREAERLLGLGFDG
MEDDDDAGFGAGAIPHSLTSASTALQGLLRKLGAGLDDILPSSALSAAAAAAASSSSASG
QLSGRLKKILAGLRADEEDGRQVEALTQLCEMLSIGTEESLGAFSVDSFVPVLVGLLNHE
SNPDIMLLAARALTHLCDVLPSSCSAVVHYGAVPCFCARLLTIEYMDLAEQSLQALKKIS
QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCRKLPSDASDFVMEAVPLLTNL
LNYHDSKVLEHASVCLTRIAEAFASSPEKLDELCNHGLVAQAASLVSVSNSAGQASLSTS
TYTGVIRLLSTCASGSPLAAKTLLLLGISGTLKDILSGSGLVAGTTVSPALTRPADQMYA
IVNLADELLPPLPVGIISLPAYSHASTKGSSLKKSACSKQGEPSSTENELSGREKLLHDQ
PELLQQFGMDLLPTMTQVYGSSVNGPIRHKCLSIIGKLMYYSSAEMIQSLVGATNISSFL
AGILAWKDPQVLIPALQIAEILMEKLPEIFLKMFVREGVVHAVESLICPEFSSPVIPQIS
QLDNHVDPVTSSRSRRNRRRSNAVNTENNSPDEPKGSHPVIANSAPCAAEIPNNSFRASV
SGRAKLFKDKYFPSDPGSCDIACTDDLLKLRTLCAKLNMIADTVKTKAKGKSKALVGNNF
DVLCNVEEQLDGIIAEMLSELSKGDGVSTFEFIGSGVITTLLNYLSCGTFGKEKVSEANL
PKLRHHAVRRYKAFVSVAIPNDEDGNKTPMALLVQKLQSALSSLERFPVVLSHSGRASTL
GGSRLVSGLGALSQPFKLRLCRAQGEKSLRDYSSNIVLIDPLASLAAVEEFLWPRVQRTE
SVSKPIALSANNSESGAASSTAGAPSVPSSTQSGRRTSLRSKSSAATSGAINKDCQEGSI
NASKGKGKAVLKSTLDEPKGPHTRNATRRKAASEKDVELKPSHGHSTSEDEDLDSSPVEI
DDALMIDDDDDVSEDEDDHEVLRGSLPACVPERVHDVKLGDANDSSVASLANDDQVQPSS
CSSTKNTSSRGLDAAEFRSPSTFGSRGAMSFAAAAMTGLTSVGSRGIRGSRDRSGLPFGT
RANEHYNKLIFTASGKQLNKHMTVYQAVQRQVVHDEDDEDRLGESDLPNDGSRFWADVFT
ITYQKADNTVEKGSVGGSAPVPKSFKSDSCTISSEAQCTSLLDSILQGELPCNLEKSNQT
YNILALLRVLEGLNQLSHRLRLQTTSDDFAEGKVATLDGLYNIGAKVPLEEFVNSKLTPK
LARQIQDVLALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALHRLQQQPGD
NNNNASEREVRVGRLQRQKVRVSRSRILDSAAKVMEMFSNQKAVLEVEYFGEVGTGLGPT
LEFYTLLSRDLQRADLGLWRSYSPDDSGMQIDGNGDDLTAKKLESDSPVERRNFVQAPLG
LFPQPWPPSAAASEGSKFFKVVEYFRLVGRVMAKALQDGRLLDLPLSTAFYKLLLGQELD
LYDILSFDAEFGKILQELQILVERKRFLDSCSSENKKIEELCFRCAPIEDLCLDFTLPGY
PDYSLKKGGENAVVNIYSLEEYISLVVDATIKTGIMRQVEAFKAGFNQVFDISSLQIFSP
QELDYLICGRRELWEPDTLVEHIKFDHGYTSKSPAIVNLLEIMAEFTPEQQHAFCQFVTG
APRLPPGGLAALNPKLTIVRKHSSAANTSNATGATESADDDLPSVMTCANYLKLPPYSTK
AIMQKKLLYAINEGQGSFDLS
NT seq
5646 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgcgcagccgcaagcgggcggaggcgtcctcttcttccacgacctcgtcccgc
tcgtccaagcgctcccgccccaaccctaaccctaaccctaatccccccgccgcctcctcc
aacccagcgcctgcacctccacggacgcgccgctccgccgctgtcagccccctctccgcg
tctgccccgtgccctccgatggactcctcgggcgacaacaaccccaaccctaacccgccg
ccgcgacgccgcggccgcccctccaatgcggacaaaggcaaggaacaacagcagcaggaa
ccctccgagaggtccagggtgcgtgaggccgagcggctgctgggcctaggtttcgacggc
atggaggatgacgacgacgcggggtttggggctggggccatccctcacagccttacctct
gcgagcaccgcgctgcaggggctgcttaggaagctcggcgccgggctggacgatatcctg
ccatcgtcggcactgtcagccgctgccgccgcggctgcgtcgtcatcatcagcgtctggg
cagctgagtgggaggctgaagaagatacttgcggggctgcgtgcggatgaggaggacgga
cgacaggtggaggcgctgacgcaactctgcgagatgctgtccattggcacggaagagtca
cttggggcattctcggtggactcgtttgtgcccgtcctggtcgggttgctcaaccacgag
agcaatcctgacatcatgctgctcgcagcacgggccctaactcacctatgtgatgtgctg
ccgtcttcctgctctgctgttgtgcattatggtgccgtgccatgcttttgcgcccggctt
ctcaccattgaatacatggacttggcggagcagtctttgcaagctcttaagaagatatcc
caggagcatccaactgcctgcttgcgggctggtgcactaatggcagtcctatcatatctt
gactttttctccacaggtgttcagagagttgcgttatctacagctgctaatatgtgtaga
aaacttccgtctgatgcatcagattttgtaatggaagcggttccactgcttacgaatctc
ctgaactaccatgattcaaaagtactcgagcatgcttctgtttgcctgacccgcattgcg
gaagcttttgcttcatctccggaaaaattggatgagttgtgcaatcatggattggttgca
caagctgctagcttagtatctgttagcaattcagcagggcaggcatccttgagtacatcg
acatatacgggtgtgattcgtcttctctcaacatgcgcaagtggatcaccattggcagct
aaaacacttcttcttcttggaataagtggaacacttaaagatatcctttcaggttctggg
ttggttgctggcacaactgtatctcctgctttaacaagaccagctgatcagatgtatgcg
attgtgaaccttgcagatgagttgcttcctcctctacctgttggaatcatttctttacca
gcgtattcccatgcttccacaaaaggctcttctctaaagaaatccgcttgtagtaagcag
ggtgaacctagttcaacagaaaatgaactgtcaggtcgggagaaattattgcatgatcag
cctgaacttctgcagcaatttggtatggacttattacctaccatgacacaggtgtatggt
tctagtgtaaatggacctatacgccataaatgcctatctatcattgggaaattaatgtac
tatagttcagctgaaatgatccaatctctcgttggtgcaacaaacatttccagcttttta
gctggcattttagcatggaaggatccacaagtgcttatccctgctcttcagatagcagaa
attctaatggaaaaacttcctgagatatttttaaagatgtttgtgagggaaggcgttgtt
catgctgtagagtcactcatatgcccagagttctcaagtccagtgatacctcaaatatca
cagctggacaatcatgttgatcctgttacatcttcacgttctaggcgcaaccgacgtcga
agcaatgctgtgaatactgaaaacaactcgccagatgaaccaaagggttcccatcctgtg
attgccaattcagcaccatgtgcggctgaaattccgaataatagttttcgtgcttcagtt
agtggtcgtgcgaagttgttcaaagataagtatttcccatcggaccctggatcatgtgat
atcgcttgtactgatgaccttcttaagctgaggacactttgtgcaaaattaaatatgatc
gctgacactgtcaaaacaaaagctaaaggaaaatcaaaagctttggtgggtaataatttt
gatgtcttatgtaatgttgaggaacagttggatggtataatagctgaaatgttgtctgag
cttagcaagggggatggtgtttcgacatttgagttcattggaagtggagttatcacaacc
ttgcttaactatctgtcctgtggaacatttgggaaggaaaaggtgtctgaagcaaaccta
ccaaagttgcgtcatcacgcagtcaggcgatataaggcattcgtatctgttgctattcca
aatgatgaggatgggaataaaactcctatggcattgctagtgcagaaactgcaaagtgct
ctctcttcattggaacgcttccctgttgtgcttagccattctggaagggcatcaactttg
ggaggatcccgtctggtgtcaggtttaggagcactgtcccaacctttcaagttgcgcctt
tgtcgagcacagggtgaaaagtcacttagggattattcatccaatattgttcttattgac
ccattggcaagtctggcagctgttgaagaattcctttggcctagagtccagcgcactgag
tcagtctcgaagcctatagcgttatctgcaaataattctgaatctggagcagctagttcc
acagctggtgcgccgtcagtgccttcgtcaactcaatctggccgtcgaacttcattaagg
tcgaagtcatcagctgccactagtggtgcaattaacaaggattgtcaggaggggagcata
aatgcatctaagggaaaaggtaaagctgttcttaaatcgactttggatgaaccaaaaggg
ccgcatactaggaatgcgacacggagaaaagctgcttcagagaaagatgttgaactgaag
ccatcacatggtcacagcacctcggaggatgaagatcttgactcttctccagttgagatt
gatgatgctttaatgattgatgacgatgatgatgtttcagaggatgaagatgatcatgag
gttctccgggggtcacttcctgcatgtgttcccgaaagagtgcatgatgtaaaattggga
gatgctaatgattctagtgttgcctcattggcaaatgatgaccaggtacagccctcatct
tgttccagtacaaagaatacttctagcaggggcctggatgctgctgaatttagaagtcca
agcacatttggttcgcgtggtgcaatgtcatttgctgcagctgccatgactgggttaact
tcagtaggtagtcgtggtattagaggtagtcgagataggagcggccttccatttggaact
cgtgcaaatgagcattacaacaaattgatatttacagccagtgggaagcagcttaacaaa
catatgactgtatatcaagctgtacaacggcaagtagttcatgatgaggatgatgaggac
aggctaggtgaatctgatttgcccaatgatggaagccgcttctgggctgatgtattcact
ataacatatcagaaggctgataacacagtggagaagggatctgttggaggctcagcccca
gtgccaaaatctttcaaatcagattcttgcacaatatcgtctgaagcacaatgtacttct
cttcttgatagcattttgcaaggagagcttccttgtaatttagagaaatcaaaccaaact
tacaatatcttagcactgttacgtgtgttggagggcttgaatcaattatctcatcgtttg
agactacagacaacctctgatgattttgctgagggaaaagttgccaccctagatgggcta
tacaatattggagctaaggtacccttggaggagtttgtcaacagtaagttgaccccaaag
cttgctcggcaaattcaggatgttcttgcactgtgtagtggcagtttaccatcttggtgc
tatcagctgacaaaagcttgcccttttctgtttcctttcgaaacacggcgacaatacttt
tattccacagcttttgggttatctcgtgcattgcatcgtcttcagcaacaacctggtgat
aataacaacaatgctagtgaaagagaagtccgggttggtagattgcaacgccagaaagtt
cgtgtttctcgtagccgtatcttggattctgctgctaaagttatggaaatgttttccaat
cagaaggctgttctagaagttgaatactttggtgaagttggaactggacttggtccaact
ttagagttttatacactcttaagtcgtgacctgcaaagggctgacttaggattatggaga
tcttattctcccgatgattctggaatgcaaattgatgggaatggtgatgatttaacagct
aaaaagcttgagtcagattcacctgttgagagaaggaacttcgtacaggcacctctcggt
ttgtttccgcagccatggccacctagtgctgctgcatcagaaggtagcaaattctttaaa
gttgtcgagtatttccgcttagttggtcgagtgatggcaaaagcattgcaagatggaagg
cttctcgatttgcctttgtcaacagcattttacaaacttctacttggacaagaacttgat
ttgtatgatatactatcttttgatgccgagtttggaaagatattgcaagaactgcaaatt
cttgttgaacggaagcgatttctggattcatgttctagtgagaataaaaaaatagaagaa
ttatgtttccgttgtgctcctattgaagacttatgtttagactttactcttccgggctat
cctgattacagtctcaagaaaggtggagagaatgctgtggttaacatttacagcttggaa
gaatatatttctttggtagtagatgctactattaagactgggataatgcggcaagtagag
gcatttaaagctggatttaatcaggtatttgacatatcatctctccaaatattttctcct
caagaacttgactatctcatttgtggacgccgcgaactttgggagccggatacactggtt
gaacatataaaattcgatcatggttatacctctaagagtcctgcaatagtcaatctactt
gagatcatggcagaatttactcctgagcagcagcatgctttctgccagtttgtgactggt
gctcctaggcttccacctggtggtctggctgccctaaatcctaagctgactattgttagg
aagcactcttctgcggcaaatacatctaatgcaactggagcaacagagtctgcagatgat
gatttgcctagtgttatgacttgtgctaattatcttaaacttccaccgtactcaaccaag
gccattatgcaaaagaaactgctttatgccatcaacgaaggccaggggtcatttgatctt
tcatag
DBGET
integrated database retrieval system
