Phragmites australis (common reed): 133924428
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Entry
133924428 CDS
T10575
Name
(RefSeq) SWI/SNF complex subunit SWI3A homolog
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
paua Phragmites australis (common reed)
Pathway
paua03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133924428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133924428
03036 Chromosome and associated proteins [BR:
paua03036
]
133924428
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133924428
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
133924428
PBAF complex
133924428
GBAF(ncBAF) complex
133924428
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SURF2
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
CCDC138_C
Motif
Other DBs
NCBI-GeneID:
133924428
NCBI-ProteinID:
XP_062225933
LinkDB
All DBs
Position
7:26499022..26506075
Genome browser
AA seq
782 aa
AA seq
DB search
MSPPAAGATATSGEAPPSPRELYTIPASSGWFRWDGIHETERQALPEFFGGAGGAGFGTA
TRNPRIYREYRDFIIGKYREDPARRLTFTEVRRALVGDVTLLQKLFAFLDASGLINFSVT
PSSSRPAGQQQEAGVVVEAPVGLQVTPRPPASYFAEEKRGGGGENGFRLPPLTSYNDVFG
EWAPGKAPICGFCGEECKDREFETLEDGFKVCSKCSKTNNDNKEEATKCPGDKKESVDNH
ASSAWTEAETLLLLEGVLKHGDDWDLIAQHVRTKNKSECIARLIQLPFGEHMLGTINGKS
VSRLHMNQTTDGKMNQHIMNESSSQSIEMVDGMQIDGKEDSADKSAEEHPAKCRRLFSSM
DATTSLMEQLALLTTATSPDVLAAAADAAIKALGNENPQARKAFRLSEREYKNKAFSSNH
VQQIDCKGCDQDTEMQGQTVTDKKQEKKFIATAYQVRAAVATAIGVAAARAKILADQEER
EMELLLASIIETQLRKIQYKIKHFDELELIMEQEYTTIQQIKGSLVNEWLKVLGQAFQAG
VSLPRDEVLTKLFLNKETGHELPEREKEAYARSRACRLALIDHAVARKKPPLNAFKPHPE
HKSKLVCNITGDTINKSEEHIWKHINGKRFLNKLEQLEEKMASGEMAEGEAAKSNEVAKK
SKSSKKDKKKATVVSLSLPREPKPEMDDSDDPDFWVPPVGSRWDDDDGKDRWESSPGKND
AAENEGASGDGGSGGGDDDDEMADKDDAESRELASSRTKRMTLEAVGPSSFASRKKKPKK
DQ
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgccggcggccggcgccaccgccacctccggcgaagcgccgccgtcgccgcgc
gagctctacaccatcccggcctcatctggttggttccggtgggacgggatccacgagacg
gagcgacaggcgctgccggagttcttcggcggcgcgggcggcgccggtttcgggacggcg
acgcggaaccctcggatctaccgcgagtaccgcgacttcatcatcggcaagtaccgggag
gaccccgcccgccgcctcaccttcaccgaggtccgcagggcgctcgtcggcgacgtcacg
ctcctccagaagctcttcgccttcctcgacgcgtccggcctcatcaacttctcggtcacg
ccctcctcctcccgccccgcggggcagcagcaggaggcgggagtcgtcgtggaggcgccc
gtggggctgcaggtgacgccgcggcctccagcgtcgtacttcgcggaggagaagcgggga
gggggcggggagaacgggttccgcctgccgccgctgacctcctacaacgatgtgtttgga
gagtgggcgcctgggaaggcgcctatatgtggtttctgcggcgaagagtgcaaggatagg
gagtttgaaacattggaggatggttttaaagtatgttccaaatgttccaaaaccaataat
gacaacaaggaagaagcaactaaatgtcctggtgacaaaaaggagagcgtggacaaccat
gcttccagtgcatggacagaagcggagacgttactccttttagaaggagtcctaaaacat
ggagatgactgggatcttattgctcagcatgtccgcacaaagaataaatcagaatgcata
gcaaggcttattcagttgccttttggtgaacatatgctgggcacaataaatggtaaatct
gttagcaggctccacatgaaccaaacaactgatggaaaaatgaatcaacacattatgaat
gaatcttcaagccaatcaattgaaatggttgatggcatgcagattgatggaaaggaagat
agtgctgataaatctgctgaagaacatcctgcaaaatgtagacggttattttcctcaatg
gatgctaccacttcattaatggagcagttagcactgctgactacagcaactagcccagat
gttcttgctgcagctgctgatgccgcaattaaagcgttgggcaatgaaaacccccaagca
aggaaagctttccgtctcagtgagagagaatacaaaaataaggcattctcttctaaccat
gtccaacagattgattgcaaaggttgtgatcaggacacggaaatgcaagggcagactgtt
actgataagaagcaggaaaaaaagttcattgctactgcatatcaagtgagggcagctgtt
gctactgctatcggtgtagctgctgcccgtgctaaaatacttgcagaccaggaagagcga
gaaatggagctccttctggcgtctataattgaaactcagctaagaaagatacaatacaag
atcaagcactttgatgagctagagttgatcatggagcaggagtacaccactatacagcaa
ataaaggggtccctcgtcaatgaatggctaaaggtcctggggcaagcatttcaggctgga
gtgtcattacccagagatgaagtgcttacaaagctgttcctgaacaaggagacggggcac
gagctgccggagcgggagaaggaggcctacgcgcggtcccgcgcctgccgcctcgcgctc
atcgatcacgccgtcgcgcgcaagaagccgccgctcaacgccttcaagccccaccccgag
cacaaatcgaagctagtatgcaacatcacgggagatacaataaacaagtcggaggagcac
atctggaagcacatcaatgggaagagatttcttaacaaactagaacaacttgaagaaaag
atggcttctggtgagatggctgaaggagaagctgcaaagtcaaatgaagtggcaaagaaa
agcaaatcaagcaagaaggacaagaagaaagctactgttgtgagcctttctttgccacga
gaacctaaaccagagatggatgattcggatgatccagatttctgggtgcctcctgttgga
agtcgttgggatgatgatgacgggaaagatcgttgggagtcctctcctgggaagaacgat
gcagcagagaatgaaggtgcatctggtgacggtggtagtggtggtggtgatgatgatgat
gaaatggctgacaaggatgatgctgaatcaagggaacttgcttcaagcaggacaaagcga
atgacactagaagcagtagggccgagtagcttcgcttcaaggaagaaaaaacccaaaaag
gatcagtga
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