Phragmites australis (common reed): 133924568
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Entry
133924568 CDS
T10575
Name
(RefSeq) BRCA1-associated RING domain protein 1-like
KO
K10683
BRCA1-associated RING domain protein 1
Organism
paua Phragmites australis (common reed)
Pathway
paua03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
133924568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133924568
04121 Ubiquitin system [BR:
paua04121
]
133924568
03036 Chromosome and associated proteins [BR:
paua03036
]
133924568
03400 DNA repair and recombination proteins [BR:
paua03400
]
133924568
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
133924568
Ubiquitin system [BR:
paua04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
133924568
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
133924568
DNA repair and recombination proteins [BR:
paua03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
133924568
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-HC5HC2H_2
RTT107_BRCT_5
PHD_NSD
zf-C3HC4_3
PTCB-BRCT
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_4
zf-RING_UBOX
zf-RING_10
zf-RING_2
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
133924568
NCBI-ProteinID:
XP_062226147
LinkDB
All DBs
Position
7:complement(28403834..28408849)
Genome browser
AA seq
627 aa
AA seq
DB search
MESLRRFLNPLVLNLQKMELELTCPVCLKLLSAPTMLPCCHTSCSKCATTRTTNGYSCAI
CKSAYRSQDLRPASHLEAIVSIHRSLSSTLSTMVTQQNTQVDIPVARAASQGTPESGNRS
GVDKSDQMKSYNPVASKLVYNQAIRPTFGNMDGVQARDPAFENKAADAVVVPTVLVQKGH
SGSQSSDGPGDLDCDSNDLEGELITNRPAPQTALKREPNVIDDNARELKRQKSIDQSERQ
PIMAGAWKCEFCHSSKTTEFTGPLSHYLHGEPLEANQAWKSNVLHVHEKCIEWAPQAFFT
GDIANNLEPELARASKIKCSVCGSKGAALGCLVKSCRKSYHVPCAHEISGCRWDEENFVM
LCPSHSSKKLPCERLKSKRKSKLQQPSSDIMLDELSSPSPMQRDELWTASPFLTSEWVIC
GSALNGHDKEILDQFEHQTGITVTNNWRPNVTHVIANTDERGACSRTLKVLMAILAGKWV
LNVNWLKACVEAREPVPEEPYEISSDVHGSFDGPRTGRLRAMQQAPSLFVGLTFYFSGHF
LPAYKVHLEDLIAAAGGSILEKADLYSTSLIVYSMEPPQGSDSDTLNKVINKRIADAEEL
AATIGCKVIPHTWLLDSIASCTVQLTV
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggagagcctgaggaggttcctgaacccgctggtgctcaacctgcagaagatggagctg
gagctcacctgccccgtctgcctgaagttgctcagcgcgcctacaatgctgccatgctgc
cacacatcctgcagcaagtgtgccactacacggactacgaatggttacagctgtgccatt
tgcaaatcagcctatcgttctcaagatttaaggccagcctctcaccttgaggcaatagtg
agcattcacaggagcctcagctctacactcagcaccatggttacacagcagaatactcaa
gttgacattcctgttgcaagggcagcatctcaaggaacaccagaatcaggaaacagaagt
ggagtagacaaatctgaccagatgaaatcttacaaccccgttgcttcaaagctagtatat
aaccaagcaattaggcctacatttgggaatatggatggtgttcaagcaagagatcctgca
tttgagaacaaagctgctgatgcagttgttgtgccaacagttcttgtacaaaagggacat
tctgggtcacaatcttctgacggccctggggatttggattgtgacagcaatgaccttgaa
ggagaattgataacaaacagaccagctcctcaaactgcactcaaaagagaaccgaatgta
atagatgacaatgccagagaattgaagaggcaaaaatccattgatcaaagcgaaagacaa
ccaatcatggctggtgcttggaaatgtgaattttgtcattcttccaaaaccactgagttt
actggcccgttgtcgcattatcttcacggggagccattagaggctaaccaagcttggaaa
tcaaatgttctgcatgtccatgagaaatgcattgaatgggctcctcaagcattctttact
ggtgatattgcaaacaacctggagcctgagttggcccgcgcttctaagatcaaatgtagt
gtttgtggatcgaaaggtgcagcccttggctgccttgtgaagagctgccgcaagagctat
catgtcccgtgtgcccacgagatctcaggctgccgatgggatgaagaaaacttcgttatg
ctttgtccttctcattcgtcaaaaaagttgccttgtgagagattaaaatcgaaaaggaag
tccaagctgcagcaaccatcttctgatataatgcttgatgagctgagctcaccttctcca
atgcaacgggatgaactttggaccgcttcaccgtttctgactagtgaatgggtgatatgt
ggatctgccctcaacggtcatgataaggaaatcttggatcaatttgagcatcaaactggc
attacagtaactaacaactggaggccgaatgtgactcatgtgattgctaatacggatgaa
cgtggggcatgttctaggacacttaaggttctcatggccatattggctgggaaatgggtt
ctcaatgtaaattggctgaaagcttgtgttgaggctagagaaccagtcccagaagagccc
tatgagatcagctctgatgttcatggctcttttgatggccctcgcacaggaaggcttcga
gcaatgcaacaggcaccaagtctgtttgtcgggttgaccttctattttagtggccatttc
ttgccggcatacaaggttcaccttgaagatttgattgccgcagcagggggatcgattttg
gagaaggctgatctctatagcacatccttgattgtttacagcatggagccaccgcaagga
agcgattcagacacccttaacaaggttatcaataagagaatagctgatgctgaagaattg
gcagccacaattggctgcaaagtaattcctcatacatggcttctggattctattgcatcc
tgcacagttcaattgactgtgtga
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