Phragmites australis (common reed): 133924599
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Entry
133924599 CDS
T10575
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133924599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133924599
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
133924599
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
133924599
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GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
TIP49
Motif
Other DBs
NCBI-GeneID:
133924599
NCBI-ProteinID:
XP_062226191
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All DBs
Position
7:complement(28960322..28966326)
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AA seq
321 aa
AA seq
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MRDLHLSLNQTQRVRLESAFHELQALAPAANASAAAAVTVADTIPVNHEDNILKGHGTSD
QDGEVVATLCGLVERVNKLVYVRTLRARYKPEVGDIIVGRVIEIAPKRWRLEINFSQDAV
LMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGSLHLQARSQKYGKLE
RGQLLTVPAYLVKRRKQHFHHLEQYDVDLILGCNGFIWVGEHVVVGEKTNTTGDQQKSST
EVENFTPLETRKHICRLANAVRLLSALGFTLTIELIIDTAEASASSNVEINDMLGAEFYV
LTAEREAKRRADLLKKKSGSR
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgagggacctccatctctcgctgaaccagacccagcgggtccgcctcgagtccgcgttc
cacgagctccaggccctcgcccccgccgccaacgcgtccgccgccgccgccgtcaccgtc
gcggacaccatccccgtcaatcacgaggacaacatcctcaaggggcacgggacgtcggac
caggacggggaggtggtggcgacgctgtgcgggctggtggagcgggtcaacaaactggtc
tacgtgcgtacgctcagggcaaggtataagccagaggttggtgatatcatagttggccgt
gtcatcgagattgctcctaagcgctggaggttggagataaattttagccaagatgctgtt
ttgatgctttcttctatgaatttacctgatggtattcagagaaggagaactgctgttgat
gaacttaatatgcggagtatctttgaagaaaatgatgttatctgtgctgaagttcgtggt
ttccagcatgatggatctctgcacctacaagcaagaagtcaaaagtatggaaagcttgag
aggggtcaattgctcacagtacctgcttacttggtaaaacgacggaaacagcatttccat
catctcgagcaatatgatgtcgatttgattcttggatgcaacggattcatctgggtaggt
gagcatgttgtggtgggtgaaaagactaatacgactggagatcagcagaagtcgagcact
gaagtagagaatttcaccccattagaaacgaggaagcatatttgccggcttgccaacgca
gtacgcctcctttcagccctagggttcactttgactatcgaactgataattgatactgca
gaagcaagtgcatcatcaaatgttgagataaatgacatgcttggggctgaattttatgtt
ctgaccgcggagagagaagccaagcgtcgagctgatctgttgaaaaagaagagtgggtca
aggtaa
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