Phragmites australis (common reed): 133925074
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Entry
133925074 CDS
T10575
Name
(RefSeq) sm-like protein LSM7 isoform X1
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133925074
09123 Folding, sorting and degradation
03018 RNA degradation
133925074
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133925074
03041 Spliceosome [BR:
paua03041
]
133925074
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133925074
mRNA degradation factors
5'-3' decay
Lsm complex
133925074
Spliceosome [BR:
paua03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
133925074
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
133925074
NCBI-ProteinID:
XP_062226882
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All DBs
Position
7:complement(35547177..35549134)
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AA seq
104 aa
AA seq
DB search
MPLLVREAGRKETALDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEYEREQ
DDPLKLCGKTRQLGLIVCRGTAVMLVSPTDGTDEIANPFLADGA
NT seq
315 nt
NT seq
+upstream
nt +downstream
nt
atgccccttttggtgcgcgaggctgggcgcaaggagaccgcactcgacctggctaagttc
gtcgacaagggcgttcaggtgaagctcaccggcggccggcaagtaactggaactttaaag
ggatatgaccagttgctgaacttagtgctggatgaagcaattgagtatgaaagagagcaa
gatgacccattgaaactgtgtgggaaaaccagacagcttggcctcattgtctgcagaggc
acagcagtcatgctggtgtcaccaactgatggaaccgacgagattgccaatcctttcctc
gccgacggggcataa
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