KEGG   Phragmites australis (common reed): 133925074
Entry
133925074         CDS       T10575                                 
Name
(RefSeq) sm-like protein LSM7 isoform X1
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
paua  Phragmites australis (common reed)
Pathway
paua03018  RNA degradation
paua03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:paua00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133925074
  09123 Folding, sorting and degradation
   03018 RNA degradation
    133925074
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:paua03019]
    133925074
   03041 Spliceosome [BR:paua03041]
    133925074
Messenger RNA biogenesis [BR:paua03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     133925074
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     133925074
Spliceosome [BR:paua03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    133925074
SSDB
Motif
Pfam: LSM DUF150_C Hfq
Other DBs
NCBI-GeneID: 133925074
NCBI-ProteinID: XP_062226882
LinkDB
Position
7:complement(35547177..35549134)
AA seq 104 aa
MPLLVREAGRKETALDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEYEREQ
DDPLKLCGKTRQLGLIVCRGTAVMLVSPTDGTDEIANPFLADGA
NT seq 315 nt   +upstreamnt  +downstreamnt
atgccccttttggtgcgcgaggctgggcgcaaggagaccgcactcgacctggctaagttc
gtcgacaagggcgttcaggtgaagctcaccggcggccggcaagtaactggaactttaaag
ggatatgaccagttgctgaacttagtgctggatgaagcaattgagtatgaaagagagcaa
gatgacccattgaaactgtgtgggaaaaccagacagcttggcctcattgtctgcagaggc
acagcagtcatgctggtgtcaccaactgatggaaccgacgagattgccaatcctttcctc
gccgacggggcataa

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