KEGG   Phragmites australis (common reed): 133925088
Entry
133925088         CDS       T10575                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2-like isoform X1
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
paua  Phragmites australis (common reed)
Pathway
paua03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:paua00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    133925088
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:paua03021]
    133925088
Enzymes [BR:paua01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     133925088
Transcription machinery [BR:paua03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     133925088
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 133925088
NCBI-ProteinID: XP_062226904
LinkDB
Position
7:35714830..35724052
AA seq 1228 aa
MEEPPKESQESPNGSDSELEPMIMDDNGLGNSHKVDEANRESLIDVDRGQSSMDVDMKGK
SSLDDGAKGKSSSNPHAKVPIDMSVESLEKFCKEASRSFFDEIGLISHQINSYNEFVSHG
LQELFDSLGEVIVEPGYDPSKKGSGGWKHGIIKFGRVKLQRPVFWSGKDEVDIDFKPRHA
RLQNMTYASKIKVEVNIQVYSLEKSDKSKTGNDGFVQKRDFINETHWISIGRLPVMVKSN
LCLLHSLKESDCLFDSGGYFLVKGMEKVFIAQEQRCLSRIWIADRPCWTVSFMSQIKRRR
IYVKLVESTKSEYFSGSKIISISFLYATMPVWLMFFALGISSDKEAFDVIDMQDSDASVI
NTISATIKESDELCEGFRNSEKACQYVDELIKNSKFPPAESFDDYVARFLFPDISGNRNK
ALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERRMVKAIQR
DLNSDRELQDLERYLDASIVTNGLNRAFSTGSWCHPYKRNERCSGIVATLRRTNPLQMMS
DLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVVQPL
IDSFISCGMNKLDEIPNEKVTRMDKIFLNGNWVGSCTDSASFVLRLRCMRRSSLIDPQVE
IKRDMHQKEVRVFSDAGRILRPLIVVENLNKIRKPKGRSYTFQELMQQEIIEFIGVEEEE
DIQCAWGIRRLLGSEGEISGYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQ
AIGYSTTNPCIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYTFGRKDDFARPEYFNGQNA
IVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKAEVENKDFHKRLKKEKIDFGKME
SKKGRVDNLDDDGLPYIGASLQTNDIVIGKVSETGEDHSIKLKHTEKGMVQKVLLSANDE
GKNFAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTRQGIVPDIVINPHAFPT
RQTPGQLLEAALGKGIALGGTMRYATPFTTASVDVIAEQLHKAGFSRWGAESVLNGRTGE
RMHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLL
AHGAAANLHERLFMLSDFSQMHACQTCERVANVIMRCVPGGKKIRGPYCGFCKSSENIVR
INVPYGAKLLYQELFSMGICLKFETEVC
NT seq 3687 nt   +upstreamnt  +downstreamnt
atggaagagccaccgaaggaaagtcaggaatcaccaaatggctctgattctgagctggaa
cctatgataatggatgacaatggattgggaaattcccataaagtggatgaggcaaacagg
gagtcccttatagatgttgacagagggcagtcttctatggatgtggatatgaagggaaaa
tcatcccttgatgatggtgccaaaggaaagtcttcttccaatccacacgcaaaagttcca
attgacatgagtgtggaaagcttggagaaattttgcaaagaagcatcaaggtcctttttt
gatgaaattggtctgattagccatcagataaattcctacaatgagtttgtctcccatggg
ctccaggagctttttgattcgcttggggaagtgattgttgaacctggctatgatccttca
aagaaaggatcaggtggctggaagcatggcatcatcaagtttgggagagtgaagcttcaa
aggcctgtattttggtctggcaaagatgaagttgatattgattttaaaccgaggcatgct
cgcctccagaatatgacatatgcttccaaaattaaagtagaagtgaatattcaggtttat
tctttagagaaaagtgacaagtctaaaacggggaatgatggttttgttcaaaaaagagac
tttattaatgaaactcattggatatctattggtcgccttccagttatggtgaaatcaaat
ttatgcttgctgcatagtctcaaggaaagtgactgcctgtttgactctggtggatacttt
ttggtcaagggaatggagaaggtattcattgctcaggagcaaagatgcctgagcaggatt
tggattgctgaccgtccttgctggactgtctcttttatgtctcaaatcaaacgaagacgc
atatatgtaaaactagttgaatctacaaagagtgaatattttagtgggagtaaaatcatt
tccatctcctttttgtatgcgactatgccagtttggttgatgttttttgccctaggcata
tcatcagataaggaagcctttgatgtgatagatatgcaagactctgatgcttctgttatc
aacacgatatctgcgactatcaaagaatctgatgaactgtgtgaaggctttcgtaattca
gaaaaagcctgtcaatatgttgatgagttgataaaaaattcaaaatttcctccagcggaa
tcctttgatgactatgttgctaggtttctctttcctgatattagtggaaataggaacaaa
gcacttttcttaggttacatggtgaaatgcctgcttatggctttcactgggaagcgcaag
tgtgataataaggatgatttccggaacaagaggttggacttggctggtgaattgcttgga
agggaacttcgggcacatattaggcatgcagagagacgcatggttaaggccattcagaga
gatttgaatagtgaccgtgagttacaagatcttgagcgttatctggatgcatcgattgtt
actaacggtctaaatcgtgccttttccactggttcttggtgccatccctacaaaagaaat
gaacggtgctcaggaattgttgcaactctaaggagaacaaatcctcttcaaatgatgtca
gacttgaggaaaacccgtcagcgggttgcttatgctgggaaagctggtgacgcgagatat
ccgaatccgtcctactggggaaagctctgttttatgtccactcctgatggtgaaaactgt
ggactcgtgaaaaatctagctgttactgctattgttagctctagggtggtgcagcctttg
attgacagcttcatttcttgtggaatgaataagctggatgaaattcctaatgagaaggtt
acaagaatggacaagatctttctgaatggcaattgggtagggtcttgtactgattcagct
tcatttgtcttgcgattaaggtgcatgagacgcagcagtctgattgatccacaggttgaa
atcaaaagggacatgcaccaaaaggaggttcgtgtgttctctgacgcagggcgaatcctc
agaccccttattgtggttgaaaatctgaataaaatcagaaaaccaaagggccgctcttac
actttccaggaattaatgcaacaagaaataattgagttcattggtgttgaagaggaggaa
gatatacaatgtgcctggggaatcaggcgtttgttggggagtgaaggagagatctctggt
tatactcactgtgagctggacccctcttttcttctgggattaagttgtggtattattcct
tttgcaaaccacaacttcgctcggagggtattgtaccaatctgaaaaacactcacagcaa
gctattggatactctacaacaaatccatgcatcagagttgatactctttctcatcaactg
tattatcctcagaggcctcttttcaaaacagttatagccgactgtcttggcagatcggat
tatacttttggaagaaaagatgactttgctaggccagaatatttcaatggccaaaatgcg
attgtggcagtcaatgttcatcaggggtttaaccaagaggattcgctggttatgaatagg
gcttctcttgaacgaggtatgtttaggactgaacacctcaggagctataaggcagaagta
gaaaacaaagacttccacaaacgactgaagaaggaaaagatagactttggaaaaatggaa
agcaagaaaggacgggtcgacaatcttgatgatgatggcttaccttacattggtgcaagt
cttcagaccaatgacattgttatcgggaaagtctcagaaactggagaagaccacagtatt
aagctgaagcatactgaaaagggaatggtacagaaagttttgctttcagcaaatgatgaa
gggaagaattttgctgttgttactctaagacaggttcgatcaccgtgccttggagataag
ttttccagcatgcatggccagaaaggtgttgttggctttctagaatctcaggagaacttc
ccatttacccgccaaggaatagtcccagatattgtgataaatccacatgccttcccaaca
cgtcaaactcctggccagctgcttgaagctgctttggggaagggaatagccctcggaggt
acaatgagatatgctacaccattcaccacagcatcagttgatgttattgcagaacagttg
cacaaggctggattttcaagatggggagccgaaagtgttctcaatggccgaacgggtgaa
aggatgcactccttgattttcatgggccctaccttttatcaaaggctgattcacatggcc
gaagataaggtgaaattccggaacactgggccagtgcacccactcacaaggcagcctgtc
gccgacaggaaaaggtttggcggagttaagtttggagaaatggagcgtgattgcctcctc
gcccatggggcagctgccaacctccatgagcggctcttcatgctcagtgacttctctcag
atgcacgcctgccagacatgtgagcgggtggctaatgttatcatgaggtgcgtccctgga
ggaaaaaagatccgtggcccgtactgcggcttttgcaaatcttcagagaacattgttagg
atcaatgtgccatatggtgcaaaattgctctaccaggagctctttagtatggggatatgt
ctgaagtttgagacggaagtttgttag

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