Phragmites australis (common reed): 133925297
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Entry
133925297 CDS
T10575
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133925297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133925297
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133925297
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133925297
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
CAF1
DUF7219
Motif
Other DBs
NCBI-GeneID:
133925297
NCBI-ProteinID:
XP_062227198
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Position
7:38165606..38166720
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AA seq
283 aa
AA seq
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MPSEFTAAAARKKQPALQIRQVWADNVEQEFKLIRAAIEHFPYVSMDTEFPGVVYRPSKH
PAALTAAERYALIKANVDALHLIQVGLTFAASPTSPPALAFEINLREFDQRVHRHSPDSI
RLLSSNGLDLAAHRARGVDARSLAALLMSSGLVCNPDVVWVTFHSAYDFGYLVKLLMGRK
LPKSMADFLNYVRVYFGQLYDVKHMMRYCGDLFGGLERVAATLKVERAAGRCHQAGSDSV
LTWDTFRQIKQLYFVKEGVQSCAGVLFGLELEDTKTKVAYAHR
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgccttcggagttcaccgccgccgccgcgaggaagaagcagccggccttgcagatccgg
caggtgtgggccgacaacgtggagcaggagttcaagctcatccgcgccgccatcgagcac
tttccctacgtgtccatggacacggagttccccggcgtggtctaccgccccagcaagcac
cccgccgccctcaccgccgccgagcgctacgccctcatcaaggccaacgtcgacgcgctc
cacctcatccaggtcgggctcaccttcgccgcctcgccgacgtcgccgcccgctctcgcc
ttcgagatcaacctccgtgagttcgaccagcgcgtgcaccgccactcgcccgactccatc
cgcctcctgtcctccaacggcctcgacctcgccgcgcaccgcgctcgcggcgtggacgcg
cgctcgctcgcggcgctcctcatgtcgtcaggactggtgtgcaacccggacgtggtttgg
gtgaccttccactcggcctacgacttcggatacctggtcaagctgctcatgggacggaag
ctgccaaagtccatggcggatttcctcaactatgtgcgcgtatacttcggacagctgtat
gacgtgaagcatatgatgaggtactgtggcgacctcttcggcgggctagagcgtgtggcg
gcgacgctcaaggtagagcgcgcggcggggcggtgccaccaggccggctccgacagcgtg
ctcacatgggacacgttcaggcagatcaaacagctctacttcgtcaaggaaggcgtccag
agttgcgccggagtgctcttcgggctggagctcgaggacaccaagaccaaggtggcctat
gcgcatagatga
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