Phragmites australis (common reed): 133925889
Help
Entry
133925889 CDS
T10575
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133925889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133925889
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133925889
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133925889
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
133925889
NCBI-ProteinID:
XP_062227614
LinkDB
All DBs
Position
8:complement(23535798..23536796)
Genome browser
AA seq
290 aa
AA seq
DB search
MFNPAAQSSVNPVAMRPPFPYAAVAPLPPPPFGVPVRVVWAHNVDAEMHVLQDFARRARY
VAFVVHYPGVVHGAAGQQDHNKLAAEKRYAIIKANVDALKPLQVGIAVGTDDGRCLAWEF
NLRGFDRETDPHAARSVEYLAERGMDFDAHRLHGIPMATLTAWFHHCRLLRRRGLPWIAY
AGAYHVAYLLKVITGGKLLPGDIAGFLGVVQQFLGVDVYDVARMARDCPSLPVGLERVAY
MLRLAPPLGSPQLAGAGGVLALQAFVTLKFGVFGGDVNRYRGLLHGLQIT
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacccggcggcgcagtcttccgtgaacccggtcgctatgcggccaccgttcccc
tacgccgcggttgcgccgcttccgcctccgccgttcggcgtcccggtccgcgtggtgtgg
gcgcacaacgtcgacgccgagatgcacgtcctccaggacttcgccaggcgcgcccgctac
gtcgccttcgtcgtgcactaccccggcgtcgtccacggcgccgccgggcagcaggaccac
aacaagctcgccgcggagaagcggtacgcgatcatcaaggcgaacgttgacgccctcaag
ccgctccaggtcggcatcgccgtcggcaccgacgacggccggtgcctcgcgtgggagttc
aacctacgcggcttcgaccgagagaccgacccccacgcggcacgctccgtcgagtacctc
gcggaacgcggcatggacttcgacgcgcaccgcctccacggcatcccgatggcgacgctc
accgcatggttccatcactgccgcctgcttcgccgacgggggctgccgtggatcgcctac
gccggcgcctaccacgtggcctacctgttgaaggtcatcaccggcggtaagctgctccct
ggcgacatagccgggttcctcggcgtcgtgcagcagttccttggcgtggacgtctacgac
gtcgcgcgcatggcccgtgactgcccgagcttgccggtgggtctggagcgcgtcgcctac
atgcttcgcctcgcgccgccattggggagccctcagctcgctggtgccggcggcgtgctt
gcgctgcaagcgtttgttacactcaaattcggtgtgttcggtggagacgtcaacagatac
agaggtcttctacacggactacaaattacgtga
DBGET
integrated database retrieval system
