KEGG   Phragmites australis (common reed): 133926227
Entry
133926227         CDS       T10575                                 
Name
(RefSeq) coatomer subunit beta'-1-like isoform X1
  KO
K17302  coatomer subunit beta'
Organism
paua  Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:paua00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:paua04131]
    133926227
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:paua04147]
    133926227
Membrane trafficking [BR:paua04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    133926227
Exosome [BR:paua04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   133926227
SSDB
Motif
Pfam: B-prop_COPA_B_2nd TPR_COPA_B WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WDR55 WD40_CDC20-Fz EIF3I Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_IFT140_1st PEP5_VPS11_N WDR90_beta-prop_4th NBCH_WD40 Beta-prop_SPT8 Beta-prop_WDR75_2nd Beta-prop_HPS5 Clathrin WD40_RFWD3 TPR_1 Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 TPR_8 WD_LRWD1
Other DBs
NCBI-GeneID: 133926227
NCBI-ProteinID: XP_062228017
LinkDB
Position
8:2189073..2200214
AA seq 906 aa
MPLRLEIKRKFAQRSERVKSVDLHPSEPWILSSLYSGSVCIWDYQSQAMVKSFEVSELPV
RSAKFVSRKQWVVAGSDDMFIRAYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD
MLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDTNNFASASLDRTTKIWSLGSPDPNFT
LDGHQKGVNCVDYFTGGDRPYLITGSDDSTAKVWDYQTKSCVQTLEGHTHNISAVCFHPE
LPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWSVGYMKGSRRMVIGYDEGTIMIKMG
REVPVASMDTSGKIIWAKHNEIQTVNIKSVSAGFEVTDGEILPLAVKELGSCDLYPQSLK
HNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSEGEYAIRESTSRIKVFNKSFQ
EKKTVRPTFLAERIFGGVLLAMCSSDFICFYDWVDCRLIRRIDVNVKNLYWADSGDLVAI
ASDTSFYILKYNRDVVASYLEGGKPVDEEGVEDAFELLHEVNERVRTGIWVGDCFIYNNS
SWRLNYCVGGEVTTMYHLDRPMYLLGYLANQSRVYLIDKGFNAIGYTLLLSLIEYKTLVM
RGDLERANEILPSIPKAQYNSVAHFLESRGMLEEALEIATDANYKFDLAVQLGKLEVAKA
IAIEAQSESKWKQLGELAMSTGKLEMAEECLLQAKDLSGLLLLYSSLGDTEGIEKLASLA
KGHGKNNVAFLCLFMLGKLEDCIQLLIGSNRIPEAALMARSYLPSKVSEIVPIWRNDLAK
VNPKAAESLADPSEYPNLFEDWQVALTVEKNIASQRGHYPPADEYLNHAEKSDMTLVEAF
KRMQVIENEEPVDAADEDGEPDQEALEENTDEAVPVDADEPEETVFVNGNEGEKQWGTNN
EGTSSA
NT seq 2721 nt   +upstreamnt  +downstreamnt
atgcctctcaggttggagatcaagaggaagttcgcgcaaaggtcggagagggtcaagtcg
gtggatcttcacccctcggagccatggatcctgtcgagcctctactctgggagtgtctgc
atctgggattatcagtcacaggctatggtgaaatcgtttgaagtctcagaattgccagtg
cggtcagcaaaatttgtttcaaggaaacaatgggttgtagctggttcagacgatatgttc
atccgtgcctacaactacaatacaatggacaaagttaaagttttcgaggctcatactgat
tacataagatgcgttgcagtccatccgactctgccatatgtgttgtcatcatctgacgac
atgttaataaaactgtgggactgggataaagggtggatgtgcacccaaatctttgaggga
cattcacactatgtgatgcaggttactttcaatccaaaggatactaacaactttgcaagt
gcatctcttgaccgtactacgaagatatggagtttgggttctccagatccaaattttaca
cttgatggacaccagaaaggtgttaactgtgttgattacttcactggtggtgacaggcct
tatttgattactggttctgatgactccactgcaaaggtctgggattaccaaacaaagagc
tgtgttcagacacttgaaggccatacacataatatttctgctgtttgtttccatcctgag
cttcctataatcattactggatcagaagatggtacagttcgtatatggcattcgacaact
tacagacttgagaacacactaaactatggccttgaaagagtatggtctgttggatacatg
aagggatcaagaaggatggtgattggttatgatgagggaacaattatgataaaaatgggt
cgtgaagtaccagtagcaagtatggataccagtggaaaaataatttgggcaaagcataac
gagatacaaactgtgaatatcaagagtgtcagtgcaggctttgaggtcacagacggggaa
atattgccccttgccgtaaaggagttaggaagctgtgatctgtacccacagagcttgaag
cataatcccaatggccgatttgttgttgtatgtggagatggtgaatacataatttataca
gccttggcttggaggaatagatcatttggatctgcactggagtttgtttggtcatcagaa
ggagaatatgcaattcgggaaagtacatcaagaataaaggttttcaataaatcattccag
gagaagaaaactgtccgtcctacatttttggcggagcgtatttttggtggggtattgttg
gcgatgtgttctagtgactttatttgcttttatgactgggttgattgcagactaatacgc
cgaattgatgtgaatgtcaagaacctctactgggctgatagtggtgacctagttgcaata
gcaagtgatacgtcattctacatcctcaagtacaacagagacgttgttgcttcttatcta
gaaggtggaaagcctgtggatgaggaaggtgttgaagatgcttttgagctgcttcatgag
gtcaatgagcgagtgcgaactggaatttgggttggagactgctttatttataacaactca
tcatggcgtctaaattattgtgttggtggcgaggtcaccacgatgtatcacttggatcgc
cctatgtacttgttgggatatcttgcgaatcaaagtcgagtttatcttattgacaagggg
tttaatgccatcgggtacacattacttctcagtttgattgagtacaagacccttgtgatg
cgtggggatttggaacgtgcgaatgaaattttaccatccataccaaaggcacaatataat
agtgtcgctcatttcttggagtctagaggtatgttggaggaggctctcgagattgctact
gatgccaattacaagtttgacctagctgtgcagcttggaaaattagaagttgcaaaggct
attgccatagaagcacaaagtgaatctaaatggaagcagcttggtgaactagccatgtcc
acaggcaagctagagatggcggaagaatgccttcttcaggcaaaggatttaagtggcttg
ttgctactgtactcatctctgggagatactgaaggaatcgaaaagcttgcttctctagcg
aaaggtcatggaaaaaataatgttgcattcctctgcctttttatgcttggtaaattggaa
gattgcatacagttgctcataggcagcaatcgtatacctgaggctgcattaatggcacgt
tcttatcttcccagcaaagtctcagaaatagtaccaatttggagaaatgatctagctaaa
gttaatccaaaagctgcagagtctctggcagatccttccgagtacccaaatttgtttgag
gactggcaggttgcacttactgtagaaaagaatattgcttctcagaggggccactatcct
cctgctgatgagtacttgaaccatgctgagaagtcagacatgactcttgtggaagctttc
aagcggatgcaggtcattgaaaatgaggaaccagtagatgcagcggatgaagatggagaa
cctgatcaagaggcattggaagagaacacagatgaagctgtcccagttgatgctgatgaa
cctgaagagaccgtttttgtaaatgggaatgagggtgagaaacagtggggtacgaacaat
gaaggaacttcatcagcctaa

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