Phragmites australis (common reed): 133926773
Help
Entry
133926773 CDS
T10575
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1 isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
paua Phragmites australis (common reed)
Pathway
paua04120
Ubiquitin mediated proteolysis
paua04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
133926773
04120 Ubiquitin mediated proteolysis
133926773
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
paua04121
]
133926773
Enzymes [BR:
paua01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133926773
Ubiquitin system [BR:
paua04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133926773
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_11
zf-RING_16
zf-RING_5
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
133926773
NCBI-ProteinID:
XP_062228829
LinkDB
All DBs
Position
8:21268649..21274634
Genome browser
AA seq
507 aa
AA seq
DB search
MIRLQTYAAFSLLATATAAYYAFSSREQFYPAMVYLSTSKICFVLLLNTGLVAMCVAWQL
VKRLFLGSLREAEVERLNEQSWREVVEILFAVTIFRQDFSVAFLAMVAALLLVKALHWLA
RKRVEYIETTPSVPMLSHLRIVSFMAFLLIVDCLFLSNSLRSLIQKREASVAIFFSFEYM
ILATSTVSTFVKYIFYVSDMLMEGQWERKAVYTFYLELISDLVHLSLYMLFFIAIFLNYG
VPLHLIRELYETFRNFRIRIADYVRYRKITSNMNERFPDATSDEINASDATCIICREEMT
TAKKLLCGHLFHVHCLRSWLERQHTCPTCRAPIIPPDNGRAASARQHGAQPGVQPAAGTG
TPASEGAPGEIMSRRQAKLEAAASAASLYGRSFAYPPVNTLNRYSAPPQSTSSTPESGEA
SSSNQPQNDQALQFQNTSDPLAPLPFNVDGAVGPGTSTRDLEKSLQRAQENFIRSQIEVL
QIQLQMVQHGAAASATNNENTEHTKND
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgatccggctgcagacgtacgcggcgttcagcctgttggcgacggcgacggcggcgtac
tacgcttttagcagccgagagcagttctacccggccatggtctacctctccacctccaag
atctgcttcgtgctgctcctcaacacgggcctcgtcgccatgtgcgtcgcctggcagctc
gtcaagcgcctcttcctgggctcgctccgggaggccgaggtcgagcgcctcaacgagcag
tcctggagggaggtcgtcgagatcctcttcgccgtcaccatctttcggcaggacttctcc
gtcgccttcctcgccatggttgccgcgctgctcctggtcaaggcgctccactggctcgcg
cggaagagggtcgagtacatcgagacgacgccgtctgtgcccatgctctcgcacctcagg
atcgtgtcattcatggcgtttctgctcatcgtcgactgcctcttcctctccaactcgctg
aggtctctcatacagaagcgggaggcgtctgttgcaatcttcttctcctttgagtatatg
attctagcaacatcaacagtatcaacatttgtgaagtatatattctatgtcagtgacatg
cttatggaaggtcaatgggagagaaaggcagtgtatacattttatttggagctcatcagt
gaccttgtgcacttgtctttatatatgctattcttcatagctatcttcctgaactatggt
gtcccactgcacttgattcgtgagctgtatgagaccttccgcaacttcagaattcgcatt
gcagattatgtacgctacagaaagattacttccaacatgaatgaacgttttccagatgct
acatcagatgagatcaatgcgagtgatgctacatgtattatttgccgtgaggagatgact
acagcaaagaaactgctctgtgggcacctgttccatgtgcattgtttaaggtcatggcta
gagcgccaacacacttgccccacgtgtagagctccaatcatccccccagataatggacgt
gctgcatcagcacgacagcatggagctcaacctggagttcagcccgctgcaggcactggc
actccagcctcagaaggagcaccaggtgagatcatgagcaggcgccaagcaaaacttgaa
gcggctgcatcagctgcttccttgtatggaagatcttttgcttatcctccggtgaacacc
ttgaataggtattcagctcctccccagtctacatcaagtactccagaatcaggagaagca
agtagttccaatcaaccgcagaatgaccaagcattgcagttccaaaacaccagcgatcct
ctagcacctctgccttttaatgtagatggtgctgttggtccaggaacaagcaccagggat
cttgaaaaatcactgcaaagggcacaggaaaactttatacggagccagatagaggtgttg
caaatccaactgcaaatggtgcagcatggtgctgctgcgtcggcaactaataatgaaaat
actgagcatacaaaaaatgactga
DBGET
integrated database retrieval system
