KEGG   Phragmites australis (common reed): 133926773
Entry
133926773         CDS       T10575                                 
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1 isoform X1
  KO
K10601  E3 ubiquitin-protein ligase synoviolin [EC:2.3.2.27]
Organism
paua  Phragmites australis (common reed)
Pathway
paua04120  Ubiquitin mediated proteolysis
paua04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:paua00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    133926773
   04120 Ubiquitin mediated proteolysis
    133926773
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:paua04121]
    133926773
Enzymes [BR:paua01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     133926773
Ubiquitin system [BR:paua04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    133926773
SSDB
Motif
Pfam: zf-RING_2 zf-rbx1 zf-C3HC4 zf-RING_UBOX zf-C3HC4_2 zf-C3HC4_3 zf-ANAPC11 zf-RING_11 zf-RING_16 zf-RING_5 zf-HC5HC2H
Other DBs
NCBI-GeneID: 133926773
NCBI-ProteinID: XP_062228829
LinkDB
Position
8:21268649..21274634
AA seq 507 aa
MIRLQTYAAFSLLATATAAYYAFSSREQFYPAMVYLSTSKICFVLLLNTGLVAMCVAWQL
VKRLFLGSLREAEVERLNEQSWREVVEILFAVTIFRQDFSVAFLAMVAALLLVKALHWLA
RKRVEYIETTPSVPMLSHLRIVSFMAFLLIVDCLFLSNSLRSLIQKREASVAIFFSFEYM
ILATSTVSTFVKYIFYVSDMLMEGQWERKAVYTFYLELISDLVHLSLYMLFFIAIFLNYG
VPLHLIRELYETFRNFRIRIADYVRYRKITSNMNERFPDATSDEINASDATCIICREEMT
TAKKLLCGHLFHVHCLRSWLERQHTCPTCRAPIIPPDNGRAASARQHGAQPGVQPAAGTG
TPASEGAPGEIMSRRQAKLEAAASAASLYGRSFAYPPVNTLNRYSAPPQSTSSTPESGEA
SSSNQPQNDQALQFQNTSDPLAPLPFNVDGAVGPGTSTRDLEKSLQRAQENFIRSQIEVL
QIQLQMVQHGAAASATNNENTEHTKND
NT seq 1524 nt   +upstreamnt  +downstreamnt
atgatccggctgcagacgtacgcggcgttcagcctgttggcgacggcgacggcggcgtac
tacgcttttagcagccgagagcagttctacccggccatggtctacctctccacctccaag
atctgcttcgtgctgctcctcaacacgggcctcgtcgccatgtgcgtcgcctggcagctc
gtcaagcgcctcttcctgggctcgctccgggaggccgaggtcgagcgcctcaacgagcag
tcctggagggaggtcgtcgagatcctcttcgccgtcaccatctttcggcaggacttctcc
gtcgccttcctcgccatggttgccgcgctgctcctggtcaaggcgctccactggctcgcg
cggaagagggtcgagtacatcgagacgacgccgtctgtgcccatgctctcgcacctcagg
atcgtgtcattcatggcgtttctgctcatcgtcgactgcctcttcctctccaactcgctg
aggtctctcatacagaagcgggaggcgtctgttgcaatcttcttctcctttgagtatatg
attctagcaacatcaacagtatcaacatttgtgaagtatatattctatgtcagtgacatg
cttatggaaggtcaatgggagagaaaggcagtgtatacattttatttggagctcatcagt
gaccttgtgcacttgtctttatatatgctattcttcatagctatcttcctgaactatggt
gtcccactgcacttgattcgtgagctgtatgagaccttccgcaacttcagaattcgcatt
gcagattatgtacgctacagaaagattacttccaacatgaatgaacgttttccagatgct
acatcagatgagatcaatgcgagtgatgctacatgtattatttgccgtgaggagatgact
acagcaaagaaactgctctgtgggcacctgttccatgtgcattgtttaaggtcatggcta
gagcgccaacacacttgccccacgtgtagagctccaatcatccccccagataatggacgt
gctgcatcagcacgacagcatggagctcaacctggagttcagcccgctgcaggcactggc
actccagcctcagaaggagcaccaggtgagatcatgagcaggcgccaagcaaaacttgaa
gcggctgcatcagctgcttccttgtatggaagatcttttgcttatcctccggtgaacacc
ttgaataggtattcagctcctccccagtctacatcaagtactccagaatcaggagaagca
agtagttccaatcaaccgcagaatgaccaagcattgcagttccaaaacaccagcgatcct
ctagcacctctgccttttaatgtagatggtgctgttggtccaggaacaagcaccagggat
cttgaaaaatcactgcaaagggcacaggaaaactttatacggagccagatagaggtgttg
caaatccaactgcaaatggtgcagcatggtgctgctgcgtcggcaactaataatgaaaat
actgagcatacaaaaaatgactga

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