KEGG   Phragmites australis (common reed): 133926934
Entry
133926934         CDS       T10575                                 
Name
(RefSeq) histone deacetylase 1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
paua  Phragmites australis (common reed)
Pathway
paua03082  ATP-dependent chromatin remodeling
paua03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:paua00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    133926934
   03083 Polycomb repressive complex
    133926934
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:paua03036]
    133926934
Enzymes [BR:paua01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     133926934
Chromosome and associated proteins [BR:paua03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     133926934
   HDAC complexes
    Sin3A-HDAC complex
     133926934
    BRAF-HDAC complex
     133926934
    REST complex
     133926934
    SHIP complex
     133926934
    MiDAC complex
     133926934
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     133926934
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    133926934
  Chromatin remodeling factors
   NuRD complex
    133926934
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 133926934
NCBI-ProteinID: XP_062229097
LinkDB
Position
8:complement(28895388..28901785)
AA seq 518 aa
MDASAGGGGNSLPTTGADGSKRRVCYFYDAEVGNYYYGQGHPMKPHRIRMTHALLAHYGL
LDQMQVLRPHPARDRDLCRFHADDYIAFLRSVTPETQQDQIRALKRFNVGEDCPVFDGLY
NFCQTYAGGSVGGAVKLNHGHDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKYHN
RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIQDVGHNKGKYYSLNVPL
DDGIDDESYQSLFKPIMAKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRFM
RSFNVPLLLLGGGGYTIRNVARCWCYETGVALGHELTDKMPPNEYYEYFGPDYTLHVAPS
NMENKNAWHQLDDIRSKLLDNLSKLRHAPSVQFQERPPEAELPEKDEDMENPDERHDAGS
DMEMNDAKPLEDSGRRSSIQSVRMKKESAEAEATDQDVNRVAAEHSKGTGLVADGVGSSK
QTIPNDPSSMAIDEPGALKVQPESSNKLQDQPTTYQKP
NT seq 1557 nt   +upstreamnt  +downstreamnt
atggacgcctcggccggcggcggcggcaactccctgccgaccaccggcgcggacgggtcg
aagcggcgcgtctgctacttctatgacgcggaggtgggaaactactactacgggcagggc
cacccgatgaagccgcaccgcatccgcatgacccacgcgctgctcgcccactacggcctc
ctcgaccagatgcaggtgctccgcccacaccccgcccgcgaccgcgacctctgccgtttc
cacgccgacgactacatcgccttcctccgctccgtcacccccgagacgcagcaggaccag
atccgcgcgctcaagcgcttcaacgtcggcgaggactgccccgtcttcgacggcctctac
aacttctgccagacctacgcggggggctccgtcggcggcgccgtcaagctcaaccacggg
catgacatcgccatcaactgggccggcggcctccaccatgccaagaagtgcgaggcatcc
ggattctgctatgtcaacgacatcgtcctggccatcctcgagctcctcaagtaccacaac
cgcgttctttatgtggatattgatatccaccacggggacggcgtggaggaggctttttac
accacggaccgggtgatgacggtctcattccacaagtttggggattatttcccgggcaca
ggggacattcaagacgttgggcacaacaaggggaagtattactccctgaatgtcccgttg
gatgatggcattgatgacgagagctaccagtcgttgttcaagcccatcatggccaaggtg
atggaggtcttccgccctggcgcggtggtgctccagtgtggtgcggattctttgtcgggc
gacaggttgggctgtttcaacctatctattaagggacatgcggaatgcgtgagattcatg
aggtccttcaatgtcccgctgctgctgcttggtggcggtgggtataccatcagaaatgtt
gcacgatgttggtgctatgagacaggggttgcacttggtcatgagctcaccgacaagatg
cctcctaatgagtattatgagtattttggtccagattatacgctacatgttgctccaagt
aacatggagaataaaaacgcatggcatcaattggatgatataagatcaaaacttctcgat
aatctttcaaaactccgacatgctcctagtgtccaatttcaagagcgacctccagaggct
gagttacctgagaaagatgaagatatggagaatcctgatgaaagacatgatgctggttct
gatatggaaatgaacgatgccaagcctctggaggactccggaaggaggagcagtatacag
agtgtaagaatgaagaaagaatctgctgaggcagaggcaacagatcaggatgttaataga
gtagctgcagaacattcaaaaggcactggactggtggctgatggagttggttcctcaaaa
caaaccatcccaaatgatccaagttcaatggccatagacgaaccaggtgctttgaaagtt
caaccagagagctcaaacaaattgcaggaccaaccaacaacgtaccagaaaccatga

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