Phragmites australis (common reed): 133927126
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Entry
133927126 CDS
T10575
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
paua Phragmites australis (common reed)
Pathway
paua03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133927126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133927126
03036 Chromosome and associated proteins [BR:
paua03036
]
133927126
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
133927126
Coactivators
SAGA/TFTC/STAGA complex
133927126
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
133927126
STAGA complex
133927126
TFTC complex
133927126
SAGA complex
133927126
SLIK complex
133927126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40
WD40_Prp19
Beta-prop_WDR3_1st
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_WDR41
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_VPS8
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_Nup120_160
Tricorn_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_IP5PC_F
RecX_HTH3
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
133927126
NCBI-ProteinID:
XP_062229418
LinkDB
All DBs
Position
8:32755110..32772775
Genome browser
AA seq
657 aa
AA seq
DB search
MEDEEMEKKVQQYLQRKGFRLTELALQEERNRLTTSALSEVALARSDNDPTRYSDGYSRL
KTWAYSSLDQYKKELLRIIYPVFIHCFMDLVAEGHMQEARSFFHTFREDHEEMHSRDLQK
LEGVLSPSHLEEMELARSIRQNKFKIKLCEYSYELLLQYLQKTQALVMLGIINEHVTFEV
SPGQPSLIFDDADVVALIGTSKDLAKQINQKEVHWGLLEDSVEERMEKALSESDKIEAES
KEADAEDNKKRNSESGKQGGSLKKAKKDKLIGATGKNIRTETSMVSVAPRVKRELTLPVT
PVEVEQSILEDLRNRAQLNSLALPSVSFYTFLNTHNGLNCSSILHDGSLVVGGFSDSSVK
VWDMSKIGQPAKTSSSQGDNESSQGERISTSDEGKRPYTLFQGHSGPVYSVAFSPFGDFL
LSSSSDSTIRLWSTNMNANLVCYKGHNYPVWDVQFSPVGHYFASASHDRTARIWSMDKIQ
PLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQTGECIRMFIGHRSMVLSLAMS
PDGRYMASGDEDGTIMIWDLSTGRCVSPLLGHSSCVWTLDFSCEGALLASGSADCTVKLW
DVSSSAKALKMEDTKGGSTNRPRLLKALPTKSTPVYSLRFSRRNLLFAAGAISLSSS
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgaggagatggagaagaaggtgcagcagtacctgcagcgcaagggcttccgc
ctcactgagctcgcgctgcaggaggagcgcaaccgcctcaccacctccgccctctccgag
gttgcactcgccaggtctgacaacgatccaacgagatactctgatggatatagtaggcta
aaaacgtgggcatatagttctcttgatcaatacaagaaggaattacttcgcatcatttac
ccagtttttattcattgcttcatggatctagtggcagagggacatatgcaggaagctcgt
tcatttttccatacgtttcgggaagatcatgaagagatgcattcaagggatcttcagaag
ttggaaggcgtcctctctccttcacatttggaggaaatggaactggcccgatccataagg
caaaataaatttaaaattaaattatgcgagtattcatatgaattgcttctccagtatctc
cagaaaacacaagctcttgtgatgcttggaataatcaatgagcatgtaacatttgaagta
tctcctggtcaaccctcattaatcttcgatgatgcggacgttgttgctctgattggaacc
agtaaggacttggcaaaacagataaatcagaaggaagtacattgggggttgcttgaagat
tctgttgaagagcgaatggagaaggcactatcagaatcagataaaattgaagctgaaagc
aaggaggctgatgcagaagataacaagaaaagaaactcagaaagtggaaagcagggtggt
tctcttaagaaggccaaaaaggataagcttataggtgcaactgggaaaaacatcagaact
gaaacaagcatggtttctgtggcacctcgagtgaaacgggagctaacacttccagtgacg
cctgtcgaagttgaacaatcaattcttgaggacttgcgaaaccgtgcacaattgaatagc
ttggcattgccatctgttagcttctacacattccttaatacacataatggattaaactgc
tcatcgatattacatgatggatctttggttgtgggtggattttctgattcgtcagtgaag
gtttgggacatgtcaaagattggtcaaccagcaaaaacatctagttcgcagggagacaat
gaatcttcccagggtgagcgcatatcaacatcagatgaggggaaaagaccctatacacta
ttccaaggtcattctggaccagtttattccgtggcatttagcccatttggggattttctc
ctgtcatcatcttcagactcaacaattagactatggagcaccaatatgaacgccaatctt
gtctgttacaaagggcacaattatccggtttgggatgtccaatttagcccagttggccat
tactttgctagcgcttctcatgacaggactgctagaatctggtcaatggataaaattcag
cctttgcgaataatggctgggcatctttctgatgttgattgtgtccagtggcatgtaaac
tgtaactacattgccaccggttcaagtgacaaaactgtaagactatgggatgttcagact
ggtgaatgtataaggatgtttattggtcataggagtatggttttatcactggcaatgtct
cctgatgggcgatacatggcctccggggatgaagatggaaccatcatgatatgggatctc
tcgactggtcgctgtgtttcaccactactgggacacagctcttgtgtgtggacacttgat
ttcagctgtgaaggggcattgcttgcatctggatcagctgactgtactgtaaaactatgg
gatgtctcttccagcgcaaaggccctgaaaatggaggacaccaaaggtggttcaactaac
cgaccgaggctactaaaagctctccctacaaaatcaactcctgtttatagtctgcggttc
tctcggaggaaccttttatttgcggctggtgctatctcgctaagctcatcctaa
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