Phragmites australis (common reed): 133927227
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Entry
133927227 CDS
T10575
Name
(RefSeq) zinc finger CCCH domain-containing protein 45-like isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
paua Phragmites australis (common reed)
Pathway
paua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133927227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133927227
03019 Messenger RNA biogenesis [BR:
paua03019
]
133927227
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133927227
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
133927227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_4
zf-CCCH_3
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
133927227
NCBI-ProteinID:
XP_062229570
LinkDB
All DBs
Position
8:34784511..34790875
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AA seq
660 aa
AA seq
DB search
MDDGDGGLSFDFEGGLDSALAAGGPAPSSTDPGGGGAGPGLYGRGRGRGRGSYRQTVCRH
WLRGLCMKGEACGFLHQFDKARMPVCRFFRDFGECRESDCAYKHSYDDVKECNMYKMGFC
PNGPSCRYKHVKLPGPPPPVEEVLQKILQMRSFNKYGQHRNNNYNQQVERPQHPQGSGLP
NQNSTENATATTQPAAGQQAQTMRQQPPQQQQNPNTNEQVQGVSNGHQATRIATPLPQGP
SRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESIENVILIFSINRTRHFQGCAK
MTSRIGGYIGGGNWKSAHGMAHYGRNFSIQWLKILLVWLNQIVNHSFVNCHFRKLIICAI
HTMIISLLRLVQISRDCQELEPFIGEQLASLLYLEPDSELTAMLIAAEAKREEEKAKGVS
VDEAADNQDIMLFDDNEEEEEEESEEEEESGQESQGRGRGRGMMWPPQMPMMRRVGPMMG
GRSFPPNMMGDGFGFGSGFGMPDPFGVPRCFPPFGGPRFPGDFTRGGPMPGMVFPGRPPQ
PGGLFPMGLDMMGPGRGLLMGGMGMGRPGRPNRPMGMAPFMPPPPPNNRVAKREQRKPGG
DRSDKYETASDQGSRGRDNTGNSGGDGSRSQSGDRYGRSALRDDDSESEEEAAPRRSRKP
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggacgacggcgacggcggcctgagcttcgacttcgagggcggcctcgactcggccctg
gcggctggggggcccgcgccgtcctcgactgaccctggcgggggcggggccgggccgggc
ctgtacggccgcggccgcggccgcggccgcggtagctaccgtcagacggtatgccggcac
tggctgcgggggctgtgcatgaagggtgaggcgtgcgggttccttcaccagttcgacaag
gcccgcatgcccgtgtgtcgcttcttccgcgacttcggcgagtgccgcgagtcggactgc
gcctacaagcactcgtacgacgacgtcaaggagtgcaacatgtataagatgggattttgc
cccaatggtcctagttgccggtacaagcatgtcaagctacctgggccaccacctcctgtc
gaggaagttctccagaagattttgcagatgcgctctttcaacaaatacggtcagcataga
aacaataactataatcagcaggtggagagacctcaacatccacagggttcagggttgcct
aaccagaattcaacagaaaatgctactgctacaacgcaaccagctgctggacaacaagca
caaacgatgcgccaacagccaccacagcagcagcagaatccaaatacaaatgagcaggtc
caaggtgtttcaaatggccatcaagccactagaatcgcgacaccccttccacaagggcca
tctaggtacttcattgttaaaagttgcaatcgggagaacctggaaatatcagttcagcag
ggaatttgggctactcagaggagtaacgaggctaaacttaatgaagcttttgaatccatt
gagaatgttattctaatattctcaattaatagaactcgccatttccaggggtgtgcaaag
atgacttctaggattggtggctacattggaggtggaaattggaaatctgctcatggaatg
gcacattacggtcggaacttctctatacagtggcttaagattttgctagtatggttaaac
caaattgtgaatcacagctttgtgaattgtcatttcagaaaactcatcatctgcgcaatc
catacaatgataatctccctgttaaggttggtgcagattagcagagattgccaggaatta
gaacctttcattggtgagcagttggcttccctgctttatctggaaccagacagtgaactt
acggctatgctaattgcagccgaggccaagagagaagaggaaaaggcaaagggagtcagt
gttgatgaggcagctgataatcaagatatcatgctgtttgatgacaatgaagaagaggag
gaagaggaaagtgaggaagaagaagaaagtggccaagaatctcaaggaaggggaagagga
agggggatgatgtggccacctcaaatgccaatgatgcgccgcgttgggccaatgatggga
gggcgcagcttccctcccaacatgatgggtgatggcttcggttttggcagtggttttggc
atgcctgatccttttggtgtgcctcgttgttttccaccatttggtggcccaaggtttccc
ggtgacttcaccagaggaggtcctatgcctggtatggtcttccctggcaggccaccgcaa
cctggaggcctcttccctatgggccttgacatgatgggtcctggtcgtggactgctcatg
ggaggcatgggaatgggcaggcctggacgacctaatcgccccatgggtatggctcccttc
atgccccctccacctccaaacaaccgtgttgcgaaaagggagcaaagaaagccaggtggt
gacaggagcgacaagtatgaaacagcgtcggaccagggaagcaggggtcgtgataatact
ggaaattctggaggagatggatccaggtctcaatctggggacagatatggtagaagcgcc
ctccgggatgatgacagcgagagcgaagaggaagcagctcctaggcgttcaaggaaacca
tag
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