Phragmites australis (common reed): 133927260
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Entry
133927260 CDS
T10575
Name
(RefSeq) THO complex subunit 2-like
KO
K12879
THO complex subunit 2
Organism
paua Phragmites australis (common reed)
Pathway
paua03013
Nucleocytoplasmic transport
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133927260
09122 Translation
03013 Nucleocytoplasmic transport
133927260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133927260
03041 Spliceosome [BR:
paua03041
]
133927260
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
133927260
Spliceosome [BR:
paua03041
]
Complex C
Other components
EJC/TREX
133927260
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
133927260
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
133927260
NCBI-ProteinID:
XP_062229625
LinkDB
All DBs
Position
1:complement(53066947..53085260)
Genome browser
AA seq
1771 aa
AA seq
DB search
MSPPLQAPDYKHITDECLREWKGLSAGAFRLPDPVPMARFLYELCWAIVRGDLPPQKSRV
ALESVVFVEEARRDEELGSVLADIIAHLGQDITISGEYRSRLVKMTKSFVESSTLAPRLL
QERCEEDFLWEVEQSKSKGQDLKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQG
CSDLACQNASSVTISIIKSLIGHFDLDPNRVFDIVLECFELYPDSNIFYQLIPLFPKSHA
AQILGFKFQYYQRLDVNSTVPSGLFRTAALLIKSGFIDLDNVYSHLLPNDDEAFEHFHSF
IERRIDEANKIGKINLAATGKDLMDDEKQEITIDLYTALEMENDIVGERAPEMEKNQKLG
LLLGFLSVHDWYHAQLLFERLAHLNPVEHIEICDALFRMIEKTMSSAYDIVFQTYYNFPR
KNDADQISPSPFDLPKEFFQMLTACGPYLHRDTQLLQKVCRVLKAYLLSSKESTHAASIV
SSESRIEEALGSCLFPSLQLIPANPAVDMEIWGVHSLLPYEARYRLYGEWEKETEQNPIV
LAARQTAKLDTRRLLKRLAKENLKPLGRMVAKLAHANPMTVLRTIVQQVEAYRDMITPVV
DAFKYLTQLEYDILQYIVIERLAQGGREKLKDDGLNLSDWLQCLASFLGHLCKKHNAVEL
KSLLQYLVNQLKKGVGIELVVLEELIQQMANVQYTENMTEEQVDAMAGSETLRQQASLFG
ATRNYKVLSKSTNRLRDSLLPKEEPKLAVPMLLLIAQHRSKIIINADATYIKMVSEQFDR
CHGIFLQYVEFLSSAVTPTTYAQLIPPLQDLVHKYHIEPEVAFLIYRPVMRLFKSANGGD
ICWPLDDNEEGESVSSEDLMLHLDSSQEPIMWSDLLNTVRSILPTKAWNSLSPDLYATFW
GLTLYDLHFPKDRYDTEIMKLHENLKQLEDNSDNTSIAISRRKKDKERIQDLLDKLNSES
QKHQQHVASVFQRLAREKDKWLSSSPDALKINMEFLQRCIYPRCVFSMQDAVYCATFVQT
LHSLGTPFFNTVNHIDCFVCKTLQPMICCCTEFEAGRLGRFLHDTLKMAYYWKSDELVYE
RECGNKPGFAVYFRFPNSQRVSYSQFIRVHWKWSSRITKALNQCMESKEYMEIRNALIVL
TKISSVFPVIRKSGVNLEKRVAKLKGDEREDLKVLATGVAAALAARKSSWLSEEEFGMGH
LDLKPATARSVPGNQLADPSMAKDQNVRAKSTESRHEKSEGATKPDVHQKKSTVSANGSD
SQIPSSSAQGKSSGAVRVADEPPKLVSDEGAKVSVKPTSESETRAPQKRAAHNAGKVLKY
DVTKEDVKSGKSTSRNVNHQASAVPADREVLSQATDVVQDANSTSSNGNLHPVPRKVSAS
SQRTTMLVTHNGAANPAGESTDLTDSTVRQQKRSAPTEEQDRSSKRRKGEIELRDSDLSE
HHIDKEKSLDSRAIDKFRSVDHEKSAAEEQNLSRAEKLKEKFDDKYDRDPREKIDRPERR
RGEDAIERSTDRLSERRERSIERMQERVTDKAPEKGREDRNKDERNKVKYVEPSVDRTHS
SDERFRGQSLPPPPPLPTSFVPQSVGANRREEDTDRRGGSTRHIPRSSPRRDEKERRQSE
ENASSLQDDGKHRREEDLRDRKREDRDVLSNKVDDRDREKGTTMKEDSDPSNASKRRKIK
RDQSSLEAGEYAPSVPQPHVHGGSAQSFDVRERERKGVTSQHRTSHVDDLPRMHGKDTTN
KPSRREADQMHEREWEEEKRPRTETKKKHRK
NT seq
5316 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccccctctccaggcgcccgactacaagcacatcaccgatgagtgcctccgcgaa
tggaagggcctgtccgccggcgccttccgcctccccgatccggtccccatggctcgcttc
ctctacgagctctgctgggcgatcgtgcggggggacctgccgccgcagaagagccgggtg
gcgctggagtcggtggtgttcgtggaggaggctcgacgggacgaggagcttggctcggtg
ctcgctgatatcatcgcccacctagggcaggatattacaatatctggtgaatatcgcagt
cgtcttgtcaaaatgactaagtcttttgtggagtcttcgacgcttgcaccgaggcttctg
caagagcgatgcgaagaagatttcctttgggaggttgaacagagtaagtcaaaaggacag
gatttaaaatccaaggaggttagggtcaacacacggcttctttaccagcaaactaaattc
aacctcttacgggaggaaagcgagggctatgccaagttggtgacactcctttgtcaaggt
tgctcagatctggcatgccagaatgcttcttcagttacaatcagcattataaagtcattg
attggtcattttgatctggacccaaatcgtgtatttgatattgtgttggaatgctttgaa
ctctatccagatagtaacatcttttatcagcttatacctctttttccaaagtcccatgct
gcccagattttggggttcaaattccagtactatcaacgattggatgtcaacagcactgtt
ccatctgggcttttcagaacagcagctttgttaatcaaatctggtttcattgaccttgat
aatgtctattctcacttgcttccaaatgatgatgaggcatttgagcattttcactctttc
attgaaagaagaatcgatgaggctaataaaattggcaaaatcaatcttgctgctactgga
aaggaccttatggatgacgagaaacaagaaataactatcgatttatacacagcattggag
atggaaaatgatatagttggggagcgagcccctgagatggaaaagaaccagaaacttggg
ctgcttcttggttttctctctgtgcatgactggtatcatgcacaactactctttgaacgt
cttgcacacctaaatcctgttgagcacattgaaatttgtgatgcactatttagaatgatt
gaaaagacaatgtcttcagcctatgatatagtttttcaaacgtattataacttccctcgt
aagaatgatgctgaccagatatcaccaagtccatttgatctaccaaaagaatttttccaa
atgctcactgcttgtggaccataccttcatcgtgatactcaattacttcaaaaggtttgc
agagtattaaaagcatacctcctctcatcaaaagagtcaacccatgcagcaagcatagtt
tcttcagaatctcggattgaagaagcacttgggtcgtgcttgtttccttcattgcagctt
atacctgctaatcctgctgttgatatggagatatggggcgttcattcccttcttccttac
gaggcccgctatcgtctatatggcgaatgggagaaggagactgaacaaaacccaattgtt
cttgctgcaaggcaaactgcaaagctggacaccagaaggctcttaaaacgtctggctaag
gaaaatctgaagccgcttggccgcatggtggctaaacttgctcatgcaaatcctatgact
gtgcttcggacaattgtccaacaggttgaagcatacagggatatgattacgccagttgtg
gatgcttttaagtacttgactcagctggagtatgacatcttgcaatatattgtgattgaa
cgcttggctcaaggcggtcgtgagaaacttaaagatgatggtcttaatctatcagattgg
cttcaatgtcttgcatcctttttgggccacctgtgcaagaagcataatgctgtggaactg
aaaagccttctccagtaccttgttaatcaactaaagaagggcgtgggcatcgagcttgtt
gtcttggaggagctcattcagcaaatggcaaatgtgcagtacactgagaatatgaccgag
gaacaggttgatgctatggcaggaagtgagactttgcggcagcaagcttcactatttgga
gcaactaggaactataaggtgctgagtaagtctacaaataggttgagggattcattgctt
ccaaaagaagagcctaaacttgcagttcctatgctactgcttattgctcagcatcgatcc
aagatcataataaatgcagatgccacatatatcaaaatggtcagtgagcagtttgataga
tgccatggaatatttcttcagtatgttgagtttctttcaagtgccgtaactccaactacc
tatgctcaactaatacctcctttgcaagatctggttcacaaataccacattgagccagag
gttgctttccttatataccgcccggtgatgaggcttttcaaaagcgctaatggtggtgac
atttgctggcctcttgatgataatgaggaaggagaatctgtatcatccgaggatcttatg
ttgcatcttgactcgtctcaggaaccaatcatgtggtcagatcttcttaatacagtccgg
tcaattttgccaacaaaagcttggaatagtctttcaccagatctatatgctactttctgg
ggcttaacgctttatgatcttcacttcccaaaagatcgttatgatacagaaatcatgaag
ctgcatgagaatctcaaacaattggaagacaactcagataacactagcattgcaatttca
cgacgtaagaaggacaaggagagaatccaagatttactcgacaaattgaacagtgaatct
cagaagcaccaacaacacgttgcatctgtgttccaaaggctagctcgtgaaaaggataag
tggttgagttccagtccagatgcactgaagatcaacatggagttcctacagcggtgcata
tacccacgctgtgtttttagtatgcaggatgctgtgtattgtgctacatttgtccaaaca
ctgcattcacttgggactccattctttaacacagtcaatcatattgattgttttgtctgt
aagaccctacagccaatgatatgctgttgcacagaatttgaagctggcaggcttggaagg
tttcttcatgatacattgaagatggcctattattggaagagtgatgaacttgtgtatgag
cgtgaatgtggaaacaaaccaggttttgcagtgtacttcagattcccaaacagccaacgt
gtatcttatagccagtttattcgagttcattggaagtggagttcaagaatcaccaaggcg
cttaaccaatgcatggaatcaaaagaatacatggaaatccgaaatgcccttattgtgctg
acaaagatatctagtgtctttcctgttattcgtaaaagcggtgtcaatcttgagaaacgg
gtggctaaactaaaaggggatgagagagaggatcttaaagttcttgctaccggtgtagct
gctgctttagctgctcgcaagagttcttggctatctgaagaagagtttggcatgggccac
cttgatctgaagccagcaacagcaagatctgtgcctggaaatcagttagcagatccctca
atggcaaaagatcagaatgttcgtgcaaagtctacagagagtaggcatgaaaagtcggaa
ggtgcaacaaagcctgatgttcatcaaaagaagagcaccgtgtctgcaaatggatctgat
agtcaaataccatcttcctctgcacaagggaaatcttcaggggctgtacgtgtagcggat
gaacctccaaaacttgtatctgatgaaggggctaaggtttctgtgaagcctacttcagaa
tctgagacaagggcaccacaaaagcgtgctgcgcacaatgcagggaaggtattgaagtac
gatgtgacaaaggaagatgtaaaatctgggaaatctaccagccggaatgtaaatcatcaa
gcctctgctgttcctgctgatagagaagtattgtctcaggcaactgatgttgtccaagat
gccaattccactagcagcaatggtaacttgcatccagtgccacgaaaggtttcagcatcc
tcccaaagaacaacaatgttggttacacataatggagcagcgaatcctgctggtgagtct
actgatttgactgactctaccgtgaggcagcagaaaagatctgctccgactgaggagcaa
gatagatcaagtaaacggaggaaaggagaaattgaacttcgagacagtgacttgagtgaa
caccatatagacaaggaaaaaagtttagactcacgcgcaatagataaatttcgttcagtg
gatcatgagaagagtgctgctgaggaacaaaacttgagtagggcagaaaaattaaaagaa
aaatttgatgataaatatgacagagatcctagagaaaaaatagatcgacctgagaggcgt
cgtggggaagatgccattgagagatcaacagatagattgtcagagaggagagaacgttct
attgaaaggatgcaagagagagtcacagataaagcccctgaaaaaggaagagaggataga
aataaggatgagaggaataaagtcaaatatgttgaaccttctgttgaccgtacacattct
tccgatgaacgattccgaggccaaagtttgccaccacctccacctcttcccacaagcttt
gtaccccaatcagttggtgctaacagaagagaagaagataccgaccgaaggggtgggagc
accaggcatattccaaggtcatctcccaggcgtgatgagaaagaaaggaggcagtcggag
gagaatgcttcatcgcttcaggatgacgggaagcacaggagagaagaagatcttcgtgat
agaaagcgtgaagatagggatgttttatcaaataaggtcgatgacagggatagggagaaa
gggactactatgaaggaagacagcgaccctagtaatgcttccaaacggagaaagattaag
cgagaccagtcttctttagaagctggggagtacgcaccttctgttccacagcctcatgtc
catggaggtagcgcgcaatcattcgatgtacgagaacgagaaagaaaaggtgtaacttca
cagcatcgtacctcgcatgttgatgaccttcctagaatgcatggcaaggatacgacaaac
aagccaagtcgtcgagaggctgaccaaatgcatgagagagaatgggaagaggaaaagcga
ccaagaactgaaacaaaaaagaagcatcggaaatag
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integrated database retrieval system
