Phragmites australis (common reed): 133927430
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Entry
133927430 CDS
T10575
Name
(RefSeq) serine/arginine-rich splicing factor SR45a-like
KO
K12897
transformer-2 protein
Organism
paua Phragmites australis (common reed)
Pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133927430
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
paua01009
]
133927430
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
paua03041
]
133927430
Protein phosphatases and associated proteins [BR:
paua01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
133927430
Spliceosome [BR:
paua03041
]
Common components
Common spliceosomal components
SR proteins
133927430
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_5
DbpA
Motif
Other DBs
NCBI-GeneID:
133927430
NCBI-ProteinID:
XP_062229877
LinkDB
All DBs
Position
8:complement(37418140..37422301)
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AA seq
269 aa
AA seq
DB search
MADSPRRRYSRSPSPYRGRPKARSRSQSPARSQSRSPLPDPRSQARSRSRSHEREESVNR
GNTLYVTGLSSRVTERDIKDFFSKEGRVVGCHVVLEPHTRVSRGFAFVTMDTVEDAERCI
KYLNNSEMEGRNITVEKSRRGRPRTPTPGNYLGHRYERRDRGRYRRGYGGRDEYYYGNGN
RRSPPPMYSSYRETRDYPSYRETRDYPPYRDARDYSPHRGPRDYYEGRGGRGYSPPYDGR
ARRERSISPYRMPERGYGGRRAGGGGYDR
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atggccgattccccgcgcaggaggtactcaaggtccccttctccttacagggggcgccca
aaagcaaggtcaagatcacaatctccagctcgatcccagtctaggtctcctttgcctgat
cctagatctcaggcaagatcaagatctagaagccatgaaagggaggagtctgtaaaccgg
ggaaatactctgtatgtgactggactctcttctagagtgactgaaagggacattaaagat
tttttctctaaggaaggaagggtggttggttgccatgttgttcttgaaccccatacacgt
gtttctcgtggatttgcctttgtcaccatggacactgttgaagatgcagaacgttgcatc
aagtatcttaacaattctgaaatggaaggccgaaacatcacagttgaaaagtcacgccgt
ggtcgcccaaggacaccaactcctggaaactatcttggtcatcggtatgagcgtagagat
cgcgggagataccgcagaggctatggtggtcgtgatgagtattattatggcaatggcaac
cgcaggtctccacctcccatgtactcttcgtacagggagactcgagactacccttcatac
agggagactcgggactaccctccctacagggacgcccgagactactctccccacaggggt
ccccgggactactatgaaggcaggggtggccgtggatactcccccccttatgatggtagg
gcgagaagggagcgatcgatttcaccgtatcggatgccagaaagaggctatggtggccgc
cgagcgggtggcggtggctatgacaggtaa
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