Phragmites australis (common reed): 133927450
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Entry
133927450 CDS
T10575
Name
(RefSeq) protein argonaute 1D-like
KO
K11593
eukaryotic translation initiation factor 2C
Organism
paua Phragmites australis (common reed)
Brite
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
133927450
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
133927450
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
133927450
microRNA pathway
RISC loading complex
133927450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133927450
NCBI-ProteinID:
XP_062229907
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Position
8:37616580..37630540
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AA seq
1031 aa
AA seq
DB search
MGSWRPRLPGFGEGSQAAEPGGGRGPGRGVGGRGGSYYQQFPQGGHGAGYYQQRQPRGTM
TSQQWQPTAPAGGYLDHGQTSSGVQPPHYYGGGRGGRGAGPSAIASELRQAMDNISSPEA
GSPELSPRAPTMEITDQLKDMSVQDESIVQAFPVPSNSYKFPHRPGNGSIGTRCLVKANH
FFAELPDKDLHQYDVSITPEVTSRIVSRSVMEELVRLHKVSYLGGRLPAYDGRKSLYTAG
PLPFTSKEFHITLLEEDDGSGLERRQKTFKVVIKFAARADLHRLEQFIAGRQAEAPQEAL
QVLDIVLRELPTARYVPFGRLFFSPNLGRRRSLGEGLESWRGFYQSIRPTQMGLSLNIDM
SATAFFEPLPVLDFVAQLLNTDIHSRLLSDAERVKIKKALRGVKVEVTHRGNMRRKYRIA
GLTSQATRELTFPVDQGGTMKSVVQYFQETYGFAIQHTYLPCLQVGNHQRPNYLPMEVCK
IVEGQRYSKRLSKSQIRALLEETCQRPHDRERDIIQMVNHNSYHEDPYAKEFGIKISERL
ASVEARILPAPRLKYNETGREKDCLPRVGQWNMMNKKMVNGGRVRSWMCVNFARNVQESI
VSGFCRELARMCQASGMDFALEPILPPMHAHPDQVERALKARFHDALNMLGPQRKELDLL
IGILPDNNGSLYGDLKRVCEIDLGLVSQCCCAKQVFKMNKQILANLALKINVKVGGRNTV
LVDAVSRRIPLVTDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQS
HRQELIEDLYKVTHVPQRGTIYGGMIRELLISFKKSTGQKPQRLIFYRDGVSEGQFYQVL
LHELDAIRKACASLEANYQPQVTFIVVQKRHHTRLFAHNHNDQNAVDRSGNILPGTVVDS
KICHPTEFDFFLCSHAGIKGTSRPAHYHVLWDENKFTADALQTLTNNLCYTYARCTRSVS
IVPPAYYAHLAAFRARFYMEPDSSDSGSMASALGRGGHGQSTSRSTRAAAGGAVRPLPVL
KDSVKSVMFYC
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgggatcttggagaccaagactgcctgggtttggcgagggctcacaggctgctgagcct
ggtggtggaagaggtcctggaagaggtgttggtggtcgcggtggatcctactatcagcaa
ttcccacagggtggtcatggagcaggctactaccagcagagacaacctcgtggaacaatg
acgtcgcagcagtggcagcctactgctcctgctggagggtatttggaccatggccagact
tccagcggagtgcagccaccacactactacggtggtggtagaggtggacgtggggctggc
ccgtccgccatagcttccgagctgcgccaagcaatggacaacatctcctcaccagaagca
ggctctccggagctgtcaccacgcgctcctacaatggaaatcacagaccagctgaaagat
atgtctgtacaggatgaatcgatcgtgcaagcatttccagtgccgagcaattcatataag
tttcctcatcgaccaggaaatggaagtattggcaccagatgtttggtgaaggcaaatcac
ttctttgctgaactgcctgacaaggatcttcatcagtatgatgtttcaatcacccctgaa
gtaacatcacgtattgtgagccgttctgtgatggaagagttggtgaggctgcacaaggta
tcatacttgggagggcggcttccagcctatgatggtagaaagagcctttacacagctggg
ccattgccatttacttcaaaagaatttcacatcactttacttgaggaagatgatggttct
ggtttggagaggcgtcagaaaacttttaaggtggtgattaaatttgctgcgagagctgat
cttcatcgtcttgagcaatttatagctggaaggcaggcagaggctcctcaagaggccttg
caagttcttgatattgtcctgcgagagctgccaacggcaagatatgtaccatttggtcgc
ttgttcttctctcctaacctggggaggaggcgatcccttggcgagggattggaaagctgg
cgtggattttaccagagcattcgtcctactcaaatgggcttgtcattgaatatcgatatg
tcggctactgctttcttcgagccgttacctgtccttgattttgttgcacagcttttaaat
actgacatccactctaggctcctctcagatgctgaacgtgttaagatcaagaaggcccta
agaggagtgaaagtggaagttactcaccgtggcaatatgcgacgaaagtatcgaatagct
ggtttaacatctcaggcaactcgggagctaacttttcccgttgatcaaggaggcacaatg
aagtctgttgtacaatattttcaagagacatacggctttgccatccagcacacctaccta
ccctgtctacaagttggcaatcatcagcgtccaaattaccttccaatggaggtctgcaaa
atagtggagggacagaggtactccaagagattaagcaagagtcagataagagctctttta
gaggagacatgccagcgtccacatgatcgggagcgtgacataattcagatggtgaatcat
aactcctaccatgaggatccttatgctaaagagtttggcattaagatcagtgagcgtttg
gcttcagttgaggcacggattttacctgctcctcggctcaagtataatgagactggtaga
gagaaggactgcttgcctagagttggtcagtggaatatgatgaacaagaaaatggtaaat
ggtggtagagtcaggagctggatgtgtgtcaactttgctcgaaacgtgcaagagagcatt
gttagtggattctgtcgtgaacttgctcgcatgtgccaagcctcaggaatggactttgct
ttggagcctattcttcctcctatgcatgcacatcctgatcaagtggagcgagctttgaaa
gccaggttccatgatgccttgaacatgctaggaccacagcgcaaggaacttgatttgctt
atcgggatacttcctgacaacaatggctctctttatggtgatttgaagcgtgtctgcgaa
atagaccttgggttggtttcgcagtgctgctgtgcgaagcaagtttttaaaatgaacaaa
cagatactggcaaatcttgctctgaagataaatgtcaaggttggaggaaggaacactgta
ctggttgatgcagtgtcaagacgcattcctttggtcactgacaggcctaccatcatattt
ggtgctgatgtaacccatcctcatcctggcgaagatagcagcccttcaattgctgccgtt
gtggcctcccaagattggcctgaggtgacaaagtatgctggtttagtttctgctcaatct
cataggcaagagttaatagaggatctgtataaggtcacacatgtccctcagagaggaacc
atctatggtggcatgatcagggagctgcttatatccttcaaaaaatcaactggtcaaaag
ccccagcgactaatattctatagggatggtgtcagtgaaggccagttttaccaagttctt
ctgcatgagcttgatgcaattcgaaaggcttgcgcgtcgctggaagcaaattaccagcca
caggtgactttcatcgtggtccagaaacggcaccacacgagattatttgcacacaaccac
aatgatcagaatgcagttgataggagtggaaacatactacctggtactgttgtggactcc
aagatttgccatcctacagagttcgacttcttcctgtgcagccatgctggcatcaagggc
acaagccgtcctgctcattaccatgtcctgtgggatgagaacaagttcacggctgatgca
ctgcagactcttaccaacaacctctgctacacctatgcgaggtgcacacgttctgtatct
atcgttccacctgcatactacgctcatctggctgccttccgcgcccgtttctacatggag
ccggacagctcggacagcggttcaatggcgagcgcccttggccgtggagggcatgggcag
tcgacgtcccgcagcacccgcgcggccgccggtggagccgtcaggcccctgcctgtgctc
aaggacagcgtcaagagtgtcatgttctactgctga
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