Phragmites australis (common reed): 133928455
Help
Entry
133928455 CDS
T10575
Name
(RefSeq) transport inhibitor response 1-like protein Os05g0150500
KO
K14485
transport inhibitor response 1
Organism
paua Phragmites australis (common reed)
Pathway
paua04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
133928455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
paua04121
]
133928455
Ubiquitin system [BR:
paua04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
133928455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
LRR_At5g56370
F-box_5
LRR_6
LRR_4
F-box-like
F-box
Motif
Other DBs
NCBI-GeneID:
133928455
NCBI-ProteinID:
XP_062230771
LinkDB
All DBs
Position
9:complement(4086343..4093201)
Genome browser
AA seq
590 aa
AA seq
DB search
MGRGGSRAAPAAAAPPWHALPDEVWEHAFSFLPSASDRGAVAGSCHSWLRAERRSRRRLI
VANCYAAAPRDAVERFPAVRAAEVKGKPHFADFGLVPPAWGAAAEPWVAAAADGWPLLEE
LSFKRMVVTDECLEMIAASFRNFQVLRLVSCEGFSTAGLAAIAAGCRNLRELDLQENEIE
DCSIHWLSLFPESFTSLVTLNFSCLEGDVNITVLERLVTRCRNLKTLKLNNAIPLDKLAS
LVRKAPQIVELGTGRFSADYHPDLFAKLEAACAGCKSLRRLSGAWDAVPEYLPAFYCVCE
GLTSLNLSYATVRGPELIKFISRCKNLQLLWVMDLIEDHGLAVVASSCNKLQELRVFPSA
PFDAAEQVSLTERGLVDVSASCPMLESVLYFCRRMTNEALITIAKNRPNFTCFRLCIIEP
HTPDYITHQPLDAGFSAIVESCKGLRRLSVSGLLTDRVFKSIGAHANRLEMLSIAFAGNS
DLGLHYILSGCKSLKKLEIRDCPFGDKPLLANAAKLETMRSLWMSSCSLTLGPCQQLARK
MPRLNVEVMNDPRRACPLDSLTDESPVETLYVYRTIAGPRSDTPAYVQIV
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgggccgtggcggctcgcgcgcggctcccgccgccgccgcgccgccgtggcacgcgctc
cccgacgaggtctgggagcacgccttctccttcctcccctccgcgtccgaccggggcgcc
gtcgcgggctcctgccactcctggctccgcgccgagcgccggtcccgccgacgcctcatc
gtcgccaattgctacgccgccgcgccacgggacgcggtcgagaggttcccagcggtccgc
gccgccgaggtcaagggcaagcctcacttcgcggacttcggactcgtcccgcccgcgtgg
ggcgccgcggccgagccctgggtcgccgccgccgccgatgggtggccgctgctcgaggag
cttagcttcaagcgcatggtcgtcaccgacgaatgcctcgagatgatcgcggcttccttc
aggaacttccaggtgctgcgcctcgtctcctgcgagggcttcagcactgccgggctcgcc
gccattgccgccggctgtagaaatctaagagaacttgacctgcaggagaatgagattgaa
gattgttctattcattggctcagtctctttccagaatctttcacttctttggtaactcta
aatttttcatgcttagagggggatgtcaatatcactgtacttgagcgactagtaaccaga
tgtcgcaacctcaaaacactcaagctcaataatgctatccctcttgacaagcttgctagc
ctcgttcgtaaggctcctcagattgtagagcttggaacaggaaggttctctgctgactac
catccagatctctttgcaaaacttgaagcagcatgtgctggttgtaaaagcctaagaagg
ctttctggagcttgggatgctgttccagagtacctgccagcattttattgtgtatgtgag
ggcctcacatcacttaatctgagttatgctactgtgcgaggccctgagctgataaaattc
attagcagatgcaaaaacttgcaactattatgggtgatggacttaattgaggaccatggt
ctagctgtggtggcatcatcttgcaataaactgcaggagttgagggtcttcccttctgct
ccttttgatgcagctgagcaagtttcattgactgaaagaggccttgttgatgtttctgcc
agttgcccaatgttggagtcagtcctctacttctgcagacggatgaccaatgaggccctt
attaccatcgcaaagaaccggcccaacttcacctgcttccgcctatgcataattgagcct
cacaccccagattacatcacgcaccagcctcttgatgcaggtttcagtgccattgtggaa
tcatgcaagggccttaggcggctctctgtctcaggccttctcacagaccgtgtatttaaa
tccatcggggcacatgctaatcgtcttgagatgctctcaatcgcctttgctgggaatagc
gacttgggccttcattacatcctttcgggctgcaagagcttgaagaagctggagatcagg
gactgcccatttggtgataagcccttgctggcaaatgctgccaagctggagacaatgcga
tccctttggatgtcgtcgtgctcactgaccttgggtccatgccaacagcttgcacgcaag
atgccccgcctcaatgtggaggtcatgaatgatcctcgacgggcatgccccttggattca
cttacagatgaaagccctgtcgagacattgtatgtctatcggacaattgcaggtccaagg
tctgatacaccagcctatgtccagattgtttag
DBGET
integrated database retrieval system
