Phragmites australis (common reed): 133928913
Help
Entry
133928913 CDS
T10575
Name
(RefSeq) F-box protein SKP2A-like
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
paua Phragmites australis (common reed)
Pathway
paua04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
133928913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
paua04121
]
133928913
Ubiquitin system [BR:
paua04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
133928913
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_6
LRR_4
LRR_At5g56370
F-box-like
LRR_8
LRR_14
F-box
Motif
Other DBs
NCBI-GeneID:
133928913
NCBI-ProteinID:
XP_062231421
LinkDB
All DBs
Position
9:26086927..26091678
Genome browser
AA seq
374 aa
AA seq
DB search
MVSGRPANEELDAWFKSLMVSSSSERGQPETGGAIPTLSGWKDLPMELLLRIMSIVGDDR
MVIVASGVCTGWRDALGWGVTNLSLSWCKQNMNNLMISLAHKFTKLQVLTLRQNKPQLED
SAVEAVANYCHDLRELDLSRSFRLSDCSLYALAHGCPQLTRLNISGCSNFSDTALTYLTC
RCKNLKCLNLCGCVKAATDRALQAIAQICGQMQSLNLGWCEDVTDKGVTSLASGCPDLRA
LDLCGCILITDESVVALANGCPHLRSLGLYYCQNITDRAMYSLANSRVKSKHGMWDKVKK
TKEEDGLASLNISQCTALTPPAVQAVCDSFPALHTCAERHSLIISGCLSLTSVHCACALH
AHRAGRALVANHAY
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggtcagcgggaggccggcgaatgaggaattggatgcatggttcaagagcctcatggtg
tcttctagcagcgagagggggcagcctgaaactggtggtgcaatacctacgttatcaggt
tggaaggatctcccaatggagctgctgctgcggattatgtcaatagttggggatgatcgg
atggtcattgtggcatctggcgtttgcactggctggcgtgatgcactgggatggggggtc
actaatctttccctctcatggtgcaagcagaacatgaataacttaatgatatctcttgct
cacaagtttacaaagttgcaagttctcactcttcggcaaaacaaacctcagcttgaagac
agtgcagtagaggctgttgccaactactgtcatgatctacgtgagttagacctcagcaga
agcttcaggcttagtgactgttccttgtatgcattggcccatggatgcccgcagcttaca
agactgaacatcagcggatgttccaatttcagtgatactgccttgacttaccttacttgc
cgctgtaaaaaccttaagtgcttgaatttgtgtggatgtgtgaaggctgctactgacaga
gctttgcaggccattgctcagatctgtgggcagatgcaatctttgaacctaggctggtgt
gaggatgttacagataagggagtgaccagcttggcatcaggatgtccagatctcagagct
ttagacttgtgcggttgcattctcataacagatgagagcgtggttgctcttgccaacggg
tgtcctcacttgcgatcgttaggcctgtactactgccagaacatcacagaccgtgccatg
tactccctagcgaacagccgtgtgaagagcaagcatgggatgtgggacaaggtgaagaag
accaaggaagaagacgggctcgcaagcctcaacatcagccaatgcacggccctgacgcct
ccggccgttcaggcggtctgcgactccttcccagcgctccacacttgcgccgagaggcac
tccctcatcatcagcggctgcctcagcctgacgtccgtccactgcgcctgcgccctccac
gcgcaccgcgccgggagagcccttgtggccaaccacgcgtactga
DBGET
integrated database retrieval system