Phragmites australis (common reed): 133929099
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Entry
133929099 CDS
T10575
Name
(RefSeq) BRCA1-associated RING domain protein 1-like isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
paua Phragmites australis (common reed)
Pathway
paua03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
133929099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133929099
04121 Ubiquitin system [BR:
paua04121
]
133929099
03036 Chromosome and associated proteins [BR:
paua03036
]
133929099
03400 DNA repair and recombination proteins [BR:
paua03400
]
133929099
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
133929099
Ubiquitin system [BR:
paua04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
133929099
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
133929099
DNA repair and recombination proteins [BR:
paua03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
133929099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
zf-HC5HC2H_2
BRCT_2
PTCB-BRCT
PHD_NSD
LIG3_BRCT
PHDvar_NSD
Motif
Other DBs
NCBI-GeneID:
133929099
NCBI-ProteinID:
XP_062231684
LinkDB
All DBs
Position
9:complement(30637500..30642858)
Genome browser
AA seq
645 aa
AA seq
DB search
MAQFKSFSGFESRAIKLTRQINSPTKPSRAGVTQKSKMASPSKAPNENIVVDEAKVSLSG
AKLTNTGPRQHSYRESNVSRKCVLSEDIEGATELKRLPTPINLFEDECVYCHSFRTSPFH
GPMVRYLKGRLVPIDEGNPSNGIYVHRTCLEWAPRVWFKGDIVMNLEIEISRSSRLRCSR
CGLLGAALGCYYKRCNKSFHVPCAVQIFDCRWDADNGFVLCPEHVSKMLPCDEMSSQTKE
KDNSSSLPRSQCSHKEESFTIFNGECQQIDQLNTTSPFLPLGQYSDKEGIFYDHQREKQQ
TNQLKTSSSSSLPQSQCSHKEEASTNSSREGQQIDQLNTSSSSSLLLDQQSDKEGISNYR
VDYRQKDQLDTSNYSSLPQSCHPDEEGISNACQAEETKSDQLDTPSCPSDQWVLLGSSLS
ASEKDSLQKFGSWTDATVTKEWAKNVTHVIVGKNAGSKWSRSYEVLMAILSGKWVVQAEW
IVDCLELRPGPEASYEVTFSNDSHRSFDGPKKGRIRAAEGAPKLFSGRSFCLSAHMSPDD
RDHLRDLIAAAEGRILEGSSNQLHLLRESSLVKPYFVYDGGAPTEFTSSSLLDLKEGVEH
AAAGAQVISHRRVLDAIAAYDAEVLNQKGWLHSAGFVSVVSVRNE
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattcaagtccttcagcgggttcgaaagtagagcgataaaattgaccagacaa
atcaactctccaactaaacccagccgggctggggtaacacagaagagtaaaatggcatcg
ccgtcgaaggcaccaaatgagaacattgtggtagacgaagcaaaagtttcattgtctggt
gctaagctaactaacaccgggcctcgtcagcattcctatagagaaagcaatgtgtcgaga
aaatgtgtgctgtccgaagacattgaaggtgctactgaattgaagagattgccaactcca
atcaacctatttgaagatgaatgtgtttattgccactcatttagaacaagtccgtttcat
ggtcccatggtacgttacctaaagggaagacttgtgcccattgacgagggcaacccatca
aatggcatctatgtccataggacatgcctggagtgggctcctagagtatggtttaagggt
gatattgttatgaacttggagatagaaatcagtcgttcttcaagattgagatgcagcaga
tgtggtctcctgggagcggcccttggttgttattacaagcgttgcaataagagttttcat
gttccatgtgcagttcagatatttgattgccgctgggatgctgataatggttttgtgttg
tgccctgaacatgtgtcaaagatgctaccatgtgatgagatgagctcacaaacgaaggag
aaagacaattcttcttccttgcctcgaagccaatgttcacacaaagaagaatctttcacc
attttcaatggggaatgccaacaaattgatcagcttaacaccacaagtcctttcttgcct
ttgggccaatattcagacaaggaaggaattttttatgatcatcaaagggaaaaacaacaa
acaaatcagcttaaaacatcaagttcttcctcgttgcctcagagccaatgttcgcacaaa
gaagaagcttccactaatagctcaagggaaggccaacaaatagatcagcttaacacctca
agttcttcttccttgctactggaccaacaatcagacaaagaaggaatttctaactatcgt
gtggattatcgacaaaaagatcagcttgatacatcgaattattcctccttgccacagagc
tgtcatccagacgaagaaggaatttccaacgcttgccaagcggaagaaacaaaatcagat
cagcttgacacaccaagctgcccttctgatcagtgggttttacttggttcatctttaagt
gcatcagaaaaggattccttgcagaaatttgggagttggaccgatgccacggtgaccaaa
gagtgggccaaaaatgtgactcatgtcatcgtgggcaaaaatgctggtagcaaatggagt
agatcgtatgaagtcctcatggcaatactgtccgggaaatgggttgtccaagctgaatgg
attgtggattgcttggagctgcgcccaggtccagaagcttcttatgaggtaacattcagc
aatgattcacacagatcatttgatgggccaaagaaaggaagaattcgagcggctgaaggg
gcaccgaaactgttttcgggaaggagtttctgcctcagcgcccacatgagccctgacgac
agagaccacttgcgagacctcatagcggccgccgaagggcggatactggagggaagcagc
aaccagctgcatttgctacgtgagagttctttggtgaagccgtacttcgtctacgacggc
ggcgctccgacggagttcacctcgagctcgctgcttgacctcaaggagggggtggagcac
gcggcggccggggcgcaggtgatcagccaccgcagggtgctggacgccatcgcggcgtat
gatgcggaggtcctgaatcagaagggctggcttcactctgcaggcttcgtatccgttgtt
tctgtcaggaatgagtga
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