Phragmites australis (common reed): 133929396
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Entry
133929396 CDS
T10575
Name
(RefSeq) exosome complex component RRP41 homolog isoform X1
KO
K11600
exosome complex component RRP41
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133929396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133929396
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
133929396
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
133929396
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
133929396
NCBI-ProteinID:
XP_062232115
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All DBs
Position
9:complement(34625645..34629087)
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AA seq
242 aa
AA seq
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MEYVNPLTGFRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKG
QQVNSSEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTNLMPRSQID
IFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYIEDSAGG
ADVTVGVLAKMDKVTLLQMDAKLPMDTFENVMGLAIEGCKAIANYIREVLLVNTKQLECQ
RG
NT seq
729 nt
NT seq
+upstream
nt +downstream
nt
atggagtacgtgaaccccctcaccggcttccgcgtcgacggccgccgccccaacgagatg
cggcagctcaagggcgaggttggcgtcgtcgcgcgggccgacgggtcggcgctgttcgag
atgggcaacaccagggtcatcgccgccgtctacggccctcgagaggtccagaacaaaggg
cagcaagtaaacagcagcgaggctctggtgcgttgtgagtataggatggcagaatttagt
actggggatcggaggaggaagccaaaaggtgaccggcgatcaacagaaatttcgcttgtt
attcgacaaacaatggaggcaagcatattaacaaatttaatgccacgctcacagattgat
atatttgtccaagttcttcaagctgatggtggaacaaggtcagcatgcatcaatgctgca
acactagctcttgcagatgctgggattccaatgcgagacattgtcacatcttgtagtgct
gggtatctgtgttctactcctttgctcgatctgaattacatagaagacagtgctgggggt
gcagatgtcactgttggcgttcttgcaaagatggacaaagtgacacttctgcagatggat
gcaaaactaccgatggatacatttgaaaatgtaatgggacttgctattgaagggtgcaaa
gcaatcgcaaattacatccgggaggtgctattggtgaacacaaaacaactggagtgccag
cgtggttag
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