Phragmites australis (common reed): 133929448
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Entry
133929448 CDS
T10575
Name
(RefSeq) protein SUPPRESSOR OF PHYA-105 1-like isoform X1
KO
K16240
protein suppressor of PHYA-105 1 and protein SPA1-related 2
Organism
paua Phragmites australis (common reed)
Pathway
paua04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
133929448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
paua04121
]
133929448
Ubiquitin system [BR:
paua04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Multi subunit type E3 associated proteins
133929448
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WDR55
Beta-prop_EIPR1
Beta-prop_TEP1_C
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR19_1st
Pkinase
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_EML
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_1st
WD40_RFWD3
PK_Tyr_Ser-Thr
WD40_like
WDR90_beta-prop_4th
Motif
Other DBs
NCBI-GeneID:
133929448
NCBI-ProteinID:
XP_062232187
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Position
9:complement(35246779..35255121)
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AA seq
1127 aa
AA seq
DB search
MEGTTAAEVGGASDGTAGDVQTKVSKENEQPAQQPSGSDALEMPATPLPLPRDIDWSEHF
SFFTSLGGYEGSTDGARGLTSVGPSNSESKPDSVTQRGLNDVEERVEELTVKNCINTDVQ
HEVSAGRSPSSGDRPTVIKGLWGNFTRMAWRTSDVASRENVAVSCGDIANLRAGDASSRE
NLAASLANNMISRNNDMSDKETPMSRGGNVNNERMMPFCNPQLLLSARPNQNEQRAEREN
ALKVSSFSNRILDQIRSKTATPASGVLGSPFQNKSKGKGVAYQDAREEVQVQANARPIIP
LDLIPTIPTSMHDPTAKVDPLLFSSGGNVSKSQSEGTSLRELIKPGQQTMSKFEKMHLFK
QILDFVDKCHAQGFNLQHLRPSYFSIPSSSQVKYTGSYTTQDLSTSIKQDIATEDIVNRK
RCFGHKFEHQESNGHVNSMLKYQKVGEQDSVAVRRSIHTFWTDQRDDNQNEDADPVVLRQ
GNSSYTVRERSKFVEPYGSNTSCAQLISSSGNQQSAFELRKLEESWYTSPEELSQSKGTF
PSNIYSLGVLLFELFCCCETWEVHCAAMSNLRQRILPPNFLSESPKEAGFCLWLLHPDPC
SRPKARDILGCDLINEGRDLSLLDQSPVAVSEDDTRSSLLLNFLSQLKEEKEMQAAKLSA
NLASLQTDIAEVGRRHSTRIGFSLDDMDILASSSALSGASTSAPQGALLSGLLPSLFKSS
IYEERVMKNLEQLENAYYSMRSTVDTCETNVIKRPDNEALRVRENLYQFQSDSDATSEQT
DRLGCFFDGLCKYARHSRFEVRGILKNADILNSPNVICSLSFDRDEEYFAAAGVSKKIKI
FEFDALLNDRVDVHYPLIEMPNKSKLSCVCWNSYIKNYLASTDYDGTVQLWDASSGQGFT
QFTEHRKRAWSVSFSEVDPTKLASGSDDCCVKVWSINQKNCIDTIRNVANVCCVQFSPYS
ARMLAFGSSDYKIYCYDLRNTRIPWCTISGHGKAVSYVRFLDPETLVSASTDNTLKIWDL
NRTNSSGLSSDSCSLTLSGHTNEKNFVGLSVHDGYITCGSETNEVFSYYKTFPMPITYHK
FGSIDPLTGQVTNEDNQQFVSSVCWRGKSNMVVAANSSGSIKVLELV
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atggaagggacgacggcggcagaggtgggcggtgccagcgacggcacggcaggggatgtg
cagactaaggtcagcaaggagaatgagcagccagcgcagcagccgtccggcagtgacgcc
ctggagatgcccgccacgccgctcccgctcccgcgggacatagattggtcggagcatttc
tccttcttcacctccttgggcgggtatgagggcagcacggatggtgcgaggggcttgacc
agcgttggcccgtcgaattctgagtcgaagccagacagtgtgacgcagcgcggtttgaac
gatgtggaagagagggtggaggagctcacagtgaagaattgcatcaacactgatgttcaa
cacgaggtttctgctggcagaagcccaagtagtggggataggcctactgttattaagggc
ctgtggggtaactttacacggatggcttggagaactagcgatgtggcgagcagggaaaac
gtagcagtgagttgtggtgacattgcaaacttgagggctggtgatgcgtctagcagagaa
aatttggcagcgagccttgccaacaatatgatctcacggaataatgatatgtctgacaag
gagacacctatgagtcgtggtggcaatgtgaataacgagcgcatgatgccattttgcaat
ccgcagcttctcttgtctgcacgacctaatcagaatgaacaacgagctgaaagggagaat
gctcttaaagtaagtagcttttcaaatagaattcttgatcagatcagaagtaagactgca
acacctgcgtctggggttctaggatccccttttcagaacaaatcgaaaggtaaaggggtt
gcgtaccaagatgcacgggaggaggtccaagtgcaagctaatgcaaggcccataatccct
ttggacttgatccctactattcctacctcgatgcatgatcctacggccaaagtggatcca
ttgcttttcagtagtggtggaaatgtttctaaatctcaatctgagggaactagcctgagg
gaactgattaagcctgggcagcaaacaatgagcaaatttgagaaaatgcatttatttaag
cagatcctggattttgtggataagtgtcatgcacagggttttaatttacaacatttgcga
ccatcatatttttcaattccatcttcaagtcaagttaaatatactggttcttatactaca
caagatctatcaacctcaatcaaacaagacatcgctacagaagatattgtgaataggaaa
aggtgttttggccataaatttgagcaccaagaatctaatggccatgtaaattcaatgctg
aagtatcaaaaggttggtgagcaagattcggttgctgtcagacgatcgatacataccttt
tggactgaccaaagagacgacaatcaaaatgaagatgccgatccagttgttttgcggcaa
ggaaattctagttacactgtcagagaacgttctaagtttgttgaaccatatggcagtaat
acatcttgtgctcaacttatatctagttctggcaaccaacaatcggcatttgaattgagg
aagttggaggaaagctggtacacaagcccagaggagctcagtcaatcgaaaggcacattc
ccatcaaacatctacagccttggggttcttctatttgagctcttttgctgttgtgagaca
tgggaagtgcactgtgctgcaatgtcaaatcttcgccaacgcattctgcctccaaatttt
ctctcagaaagtcctaaggaggctggcttctgcctttggttactgcatccagatccctgt
tcaagaccaaaagctagagacattcttggatgtgacttgataaatgagggtcgagatttg
tccttattagatcagtcaccagttgccgtaagtgaagatgacaccagatctagtttgcta
ctcaatttcctttctcaattgaaagaagaaaaggagatgcaggctgccaagttatcagca
aatcttgcaagcttacaaacagatatcgcagaggttgggagaagacactcaacaaggata
ggatttagtttagatgacatggatatactggcaagttccagtgctttgtcaggagcttct
acgagtgccccacaaggtgcattgctgtcaggtttgttaccatcattgttcaagtcaagc
atatacgaggagcgggtgatgaagaatttggagcagcttgaaaatgcatattactccatg
aggtccactgtggacacgtgtgaaactaatgtaatcaaacgtccagataatgaggctttg
agggtccgtgaaaatttatatcaatttcaaagtgattctgatgctacgagtgagcaaaca
gaccgcctgggatgcttttttgatggtttatgcaaatatgcccggcacagtaggtttgag
gtacgaggaattttgaagaatgcagatatacttaactctccgaatgtcatttgttcgttg
agtttcgatagggatgaagaatattttgctgctgctggagtttcgaagaaaataaaaata
tttgaatttgatgcactcttaaatgatcgtgttgatgttcattatccattgatagagatg
cctaacaagtccaagctaagctgtgtctgttggaacagctatataaagaactacctggca
tcaacagactatgatggcactgttcagttatgggatgccagctctggtcaaggattcaca
cagtttacagaacaccggaaaagagcttggtctgttagtttctcagaagtggacccaact
aagttggcaagtgggagtgatgattgttgcgtgaaagtatggagtattaaccagaaaaat
tgcattgatacaatcagaaatgtggccaatgtatgctgtgtacaattctccccatactcc
gcccgcatgctagcttttggttcatctgattacaagatatactgttatgatctgaggaac
acaaggatcccttggtgtactatttcgggacatgggaaagctgtcagttatgtaaggttc
ttggatccagaaacacttgtctctgcatcaacggacaacacattgaagatatgggacctt
aaccggactaattccagtggattatcttctgattcttgcagcctgacactgagtggtcat
accaacgagaagaattttgtaggattatctgttcacgatggatacataacatgtggctct
gaaaccaatgaagtattttcttactacaaaacctttcccatgccaataacttatcataag
tttggttcgatcgacccgttaactggacaagtgacaaatgaagacaatcaacaatttgtg
tcaagtgtttgctggagaggaaagtcaaacatggtagtggctgccaactctagtggcagc
atcaaagtgcttgagcttgtgtga
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