Phragmites australis (common reed): 133929533
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Entry
133929533 CDS
T10575
Name
(RefSeq) DNA damage-binding protein 1-like isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
paua Phragmites australis (common reed)
Pathway
paua03420
Nucleotide excision repair
paua04120
Ubiquitin mediated proteolysis
Brite
Ubiquitin system [BR:
paua04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
133929533
DNA repair and recombination proteins [BR:
paua03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
133929533
TCR (transcription coupled repair) factors
Cul4-CSA complex
133929533
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133929533
NCBI-ProteinID:
XP_062232310
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Position
9:36099109..36109451
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AA seq
1165 aa
AA seq
DB search
MADRIEKKNGGSQALPLFRLRPPSPSFSHLVEPSSQWHTAAAEMSVWNYVVTAHKPTSVS
HSCIGNFTSPNQLNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIATIELFQPHNETQDF
LFIATERYKFCVLQWDAEKSELLTRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDG
LFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLHGCVKPTIVVLYQDNKDARHVKTYEVAL
KDKDFVEGPWSQNNLDNGAGLLIPVPAPLGGVIIIGEETIVYCNANATFKAIPIKQSIIR
AYGRVDPDGSRYLLGDNTGTLHLLVLTHERERVTGLKVEYLGETSIASSISYLDNGVVYV
GSRFGDSQLIKLNLQADASGSFVELLERYVNLGPIVDFCVVDLDRQGQGQVVTCSGAFKD
GSLRVVRNGIGINEQASVELQGIKGLWSLKSSFNDPYDMYLVVSFISETRFLAMNMEDEL
EETEIEGFDAQTQTLFCQNAINDLLIQVTANSVRLVSCTSRELVDRWNAPAGFSVNVASA
NASQVLLATGGGHLVYLEIKEAKLVEVKHAQLEHEISCLDLNPIGENPHFSSLAAVGMWT
DISVRIFSLPDLELIRKENLGGEIVPRSVLLCTLEGVMYLLCALGDGNLFSFLLNACTGE
LTDRKKVSLGTQPISLRTFSSKGTTHVFASSDRPTVIYSSNKKLLYSNVNLKEVNHMCRF
NTAAFPDSLAIAKESELSIGTIDDIQKLHIRTIPLNEQARRICHQEQSKTLAFCSFKYNQ
TSMEESETHFIRLLDHQTFEFLSTYPLDQYECGCSIISCSFSDDNNVYYCVGTAYVLPEE
NEPTKGRILVFAVEDGRLQLIVEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLREDGS
HELQSECGHHGHILALYTQTRGDFIVVGDLMKSISLLVYKVAFNSLLDTLQQFYFLFQSL
HWANYHCFSFGQHEESAIEERARDYNANWMTAVEMLDDEIYIGAENSYNLLTVRKNSDAA
TDDERARLEVVGEYHLGEFVNKFRHGSLVMRLPDSEMGQIPTVIFGTINGVIGIIASLPH
DQYVFLEKLQSSLVKFIKGVGNLSHEQWRSFHNDKKTVEARNFLDGDLIESFLDLSRSKM
EEVAKVVGVSVEELSRRVEELTRLH
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggccgatagaatagaaaagaagaacggagggagccaagctctgccgctctttcgtctc
cgaccgccgtctccctccttctctcaccttgtagagccctcctcacagtggcacacggcg
gcggcggagatgagcgtgtggaactacgtcgtgacggcgcacaagccgaccagcgtcagc
cactcctgcatcggcaacttcaccagccccaaccagctcaacctcatcatcgcgaaatgc
acccgcatcgagatccatttgcttactcctcagggccttcagcctatgcttgatgtacct
atatatggaagaattgcaacgattgagctcttccaacctcataatgagactcaggatttc
cttttcattgctacggaaaggtacaaattctgtgtcctgcagtgggatgcagaaaaatca
gagcttctcaccagagccatgggagatgtttctgatcgcattggccgccctacagacaat
ggacagatcggaattatcgaccctgactgtagacttattggtcttcacctttacgacggc
ttatttaaggttataccatttgacaacaaaggacagctgaaggaagctttcaatatcaga
ctcgaagaacttcaagtattggacatcaagtttctgcatggttgtgttaaacctactatt
gttgtcctctaccaggataataaagatgcgaggcatgttaagacatatgaagttgcattg
aaagacaaagactttgttgaaggtccttggtcgcagaataatttagacaatggtgctggt
ctgttaataccagtaccagctccacttggtggtgtgataattatcggcgaggagacaata
gtttactgcaatgccaatgctacatttaaagctataccaatcaaacaatccatcataaga
gcatatggacgggttgacccagatggttctcgttatttacttggtgataatacaggaact
ctgcatttacttgtccttacccatgagcgagaaagggttactggtttgaaagttgagtac
ttgggagagacttcaattgcatcatcaatttcatatcttgataacggtgttgtctatgtt
ggttcacgatttggtgattcacagctgataaagctgaaccttcaagctgacgcaagtggt
tcatttgttgaacttcttgagcggtatgtgaatcttggacctattgtggacttctgcgtg
gttgaccttgataggcaggggcagggtcaggtggtcacttgttctggggcatttaaagat
ggttcccttcgggtggttcggaatggtatagggattaatgagcaggcttcagtagaactc
caaggtatcaagggattatggtcactgaaatcttccttcaatgatccttacgacatgtac
ctagtcgtgagctttataagtgagacacggttcttggctatgaacatggaagatgaatta
gaagaaaccgagatagaggggtttgatgcacaaacccagaccttgttttgtcaaaatgcc
atcaatgatcttcttatacaggttaccgctaattctgtccggttagttagttgcacctct
cgagagctagtggatcgatggaatgcaccagcaggattttcagtcaatgttgcatcagct
aatgccagtcaggttctgttggcaacgggtggtggccatcttgtttacctagaaatcaag
gaggctaagcttgttgaagtgaagcatgcacagctagaacacgagatttcttgtcttgat
ttgaacccaatcggggagaatccacactttagttccctagctgctgttgggatgtggact
gatataagtgttagaatattttcacttccagaccttgaattaataaggaaggaaaatcta
ggtggagaaattgttcctcggtctgttctgctgtgcaccttggagggggttatgtatttg
ctctgtgctcttggagatggtaacctgttcagttttctgttgaatgcatgtacaggtgaa
ctgactgatagaaagaaggtgtcccttgggacccaaccaattagccttcgtacattctca
tcgaagggtacaacccacgtgtttgcttcatcagatagaccgactgtcatctacagcagc
aataagaagctgctctatagcaatgtcaatttgaaagaagttaatcatatgtgtcgtttt
aatacagctgcttttccagacagccttgcaattgcgaaagaaagtgaactttcaattgga
accattgatgatatccaaaagcttcatatccgcacaatcccccttaatgaacaagcacga
cgcatttgccaccaggagcaatcaaagacactagcattctgcagtttcaagtacaaccag
actagtatggaggaaagtgagacgcattttattcgtctgttagatcatcaaacttttgag
ttcctgtctacatatcctctagatcaatatgaatgcggctgctccatcattagctgctca
ttctcagatgataataacgtttactactgtgtgggaactgcatatgttttacctgaggaa
aatgaaccaacaaaggggcgaatccttgtatttgcagttgaagatggaaggttgcaatta
attgtagagaaagaaaccaaaggagctgtttactcgttgaatgcattcaatggaaaattg
ttggctgctatcaaccagaagattcaattgtataagtggatgctacgtgaggatggttca
catgagctgcaatctgagtgtggccaccatgggcacatactggccttgtatacgcaaacc
cgtggtgacttcattgtagttggtgatctgatgaaatcaatatccttgctggtctacaag
gtagcctttaactctttgcttgacacattgcaacaattctattttttattccaatctctt
cattgggccaattaccattgtttttcttttgggcagcatgaggaaagtgcgatcgaagag
cgtgctagggattacaatgcgaactggatgactgcagttgagatgcttgatgatgaaatc
tatattggtgcagagaatagctataacctactcactgtgcgcaagaacagtgatgcagcc
acagatgatgaaagggccaggcttgaggttgttggggagtaccatcttggggagtttgtg
aacaaattccgccatggttcacttgtaatgcgccttccagactcagagatgggccagatt
cccacagtgatctttggcacaatcaatggggtcattggcattattgcctcccttccacac
gaccaatatgtgtttctggagaagctccagtccagtcttgtaaagttcataaagggtgtt
ggaaacctcagccatgagcaatggcggtcgttccataacgacaagaagacggtggaggct
cggaacttcctggatggtgacctgatcgagtcattccttgaccttagcagaagcaagatg
gaggaggtggccaaggtcgtgggtgtatctgtggaggagctgtccaggagggtggaagag
ctgacgagacttcactag
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