Phragmites australis (common reed): 133929550
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Entry
133929550 CDS
T10575
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03013
Nucleocytoplasmic transport
paua03015
mRNA surveillance pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133929550
09122 Translation
03013 Nucleocytoplasmic transport
133929550
03015 mRNA surveillance pathway
133929550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133929550
03041 Spliceosome [BR:
paua03041
]
133929550
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133929550
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133929550
Spliceosome [BR:
paua03041
]
Complex C
Other components
EJC/TREX
133929550
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
133929550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
133929550
NCBI-ProteinID:
XP_062232336
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All DBs
Position
9:36220754..36225546
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AA seq
429 aa
AA seq
DB search
MMGEAKENDVYEEELLDYEEDDDKAVDGSAAKPTGEVAKKGYVGIHSSGFRDFLLKPELL
RAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVAAL
VLCHTRELAYQICHEFERFSKYLPELKVAVFYGGVHIRKHKDLLKNECPHIVVGTPGRIL
ALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKDIRP
VCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVIFVKSV
SRAAELNKLLCECNFPSICIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVN
IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQ
IDTSTYMPS
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgatgggagaggccaaggagaacgacgtctacgaggaggagctcctggactacgaggaa
gacgacgacaaggccgttgatggctccgccgccaagcccaccggagaggtcgccaagaag
ggctatgtcgggatccacagttccgggttcagagacttcctgctcaagccagagctgctt
cgtgctatccaggactgcggttttgagcatccttccgaagtgcaacacgagtgcatccct
caagcaattcttggaatggatgtcatctgtcaagcaaaatctgggatggggaagactgct
gtttttgtcctttcatccctccagcaaattgaccctgtagctggtcaggtagcagcgctt
gtattgtgccacacaagggaactggcttaccagatatgtcatgaatttgagaggttcagc
aaatatctgcccgaattaaaagttgcagtcttctatggaggagttcacatcagaaagcat
aaagatttgttgaagaatgaatgccctcatattgtggtcggcacaccgggaaggatactt
gctcttgccagagaaaaggatctctccttgaagaatgtgaggcatttcattctagatgaa
tgtgacaagatgcttgaatcacttgacatgcggagagatgtccaggagatttttaaaatg
acacctcatgataagcaggtcatgatgttttcagcaacactcagcaaggacattcgtcct
gtatgcaagaaatttatgcaagatccgatggaaatttatgttgatgatgaggcaaagttg
accctccatggtcttgtacagcactacataaaactgagcgaggcggagaagaaccgaaaa
ttgaatgatctcttagatgctcttgatttcaaccaagttgtcatatttgtgaagagtgta
agcagagctgcagaactgaataagttgctttgtgaatgcaacttcccttcaatctgcatc
cattctgggatgacccaggaagaaaggttaacccgatacaagaacttcaaggaaggacac
aagagaattttggtggctacagatttagttggcaggggcattgacattgagcgtgtcaac
attgtgataaactatgacatgccagactcagctgatacatatttgcacagggttggaagg
gctgggcgttttggtacaaagggacttgcaattacctttgtttcctctgcgtcagattct
gatgttcttaaccaagtgcaagaaaggttcgaggtggacataaaggaactgcctgagcaa
attgacacttccacatacatgccatcgtaa
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