KEGG   Phragmites australis (common reed): 133929560
Entry
133929560         CDS       T10575                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
paua  Phragmites australis (common reed)
Pathway
paua03018  RNA degradation
paua03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:paua00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133929560
  09123 Folding, sorting and degradation
   03018 RNA degradation
    133929560
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:paua03019]
    133929560
   03041 Spliceosome [BR:paua03041]
    133929560
Messenger RNA biogenesis [BR:paua03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     133929560
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     133929560
Spliceosome [BR:paua03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    133929560
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 133929560
NCBI-ProteinID: XP_062232352
LinkDB
Position
9:36286615..36289129
AA seq 99 aa
MASGGPALESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVL
GLYIIRGDNISVVGEVDEDLDARLDLSKLRAHPLKPVIH
NT seq 300 nt   +upstreamnt  +downstreamnt
atggcatccggaggtccggcgctcgagtcgctcgtcgaccaggtgatctccgtcatcacc
aacgatggccgcaacatagtgggcacgttgagaggattcgatcaggccaccaacattatc
ctcgacgagtcccatgagagggtctactctacaaaggagggagttcaacagcttgttctt
ggtttgtacattatcaggggtgacaacataagtgtcgtgggtgaggtggacgaagacctg
gatgcaaggttggatctgtcaaagctaagagctcacccgctcaagcctgtcatccactga

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