Phragmites australis (common reed): 133930399
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Entry
133930399 CDS
T10575
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133930399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133930399
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133930399
mRNA degradation factors
5'-3' decay
Decapping complex
133930399
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_Vps41
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_C
Beta-prop_EDC4L
Motif
Other DBs
NCBI-GeneID:
133930399
NCBI-ProteinID:
XP_062233020
LinkDB
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Position
10:complement(24187798..24197340)
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AA seq
1298 aa
AA seq
DB search
MASPSGNPNPSPSAPFELGMLFRPPPNPNLPTTTGVFPGGPAPAAATQPPPTGPYSYPPA
TPPFRRGPYLHYPNDPHGFQLPAAAAAAFANANPTANPIPNPGPNPGARLMQLLGNTAPT
HLDSAASMPPSSEFSAAPAAPLPATSSAPPARILSSKMPRGRLLGAGDRAVHDVDWRLPG
EAEPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKFGNIRVLNINTALRSLLRGHT
QRVTDMAFFAEDVHRLASASVDGRVYVWKIDEGPDEENKSQITGKIEIAIQIIGDAETYH
PRICWHSHKQEILYVGIGNCILRMDITKVGRGRDFGTVEPLKCPLDKLIDGVNMVGKHDR
DITDLSISQWMTTRLASASKDGTVKIWDDRRSVLLSVLKPHDGQAVYSVSFLTAPEQPNH
INLVTAGPLNREVKIWASTNEEGWLLPSDSETWKCTQTLELVSSLEHRSEEAFFNQVAVL
PQASLILLANAKKNAIYAVHVEYGPDPASTRLDYIADFTVTMPILSLTGTHETQSDGEQA
VQVYCVQTMAIQQYGLELSLCLPPTADNAGPGRDPALSHVYERPPEMADVESSAGTTPID
SSIIVLTKPSSDSQATEADSSLDVPSVAPTSKMNLAGSPVVLSRHPSGGPSHGDRDADQS
SIGRKDSFGKEEPGGQSDGIAISNPRPMFQVGGHATHLITPSEIISGVLTSTEKVASVSS
QNVEAEAKHMDERKSNKKFELEAVKETQIHPEKKAIPDKNSEQTVDTISERTITTDKYNI
EDSHPLSDRSVPTLLKQPSGAGEENVVKRATEAPERTDGPCASRGLQLPSATKEGKVLHP
QVSGQLSPSTSTFNSTDSLHEPRSNTNPPTDSSLQATAIQGTLQQLVAMYSDMQKQLSTI
VSAPIAKEGKRIEASLGRNMEKSIKANIDAMWARFQEENARHEKTERERMQQMATLIATS
VNKDIPVMLEKSLKKEISSLGPAVARTTAPIIEKSLSSAVSDSLQKVLGDKVVNQLDKSV
STKLEASVARQIQTQFHTSAKQTLQDTFRSSFESSVIPAFEQSCKTILEQVDGAFQKGMS
EHSAAIQQQVVTANTPLAQTLRETITSVSSVTQGLTSELLDGQRKLLSLVASGSPILHNA
GVLQPSNGPVTDLPEVDAPLDPLKELGRLITERKFDEAFTMALQRSDVSIVSWLCSQVDL
QALCASVPIPLNQGVLLALFQQLACDIANDTSRKLQWMTNVAVAINPTDPIIAMHVRPIF
DQVYNVLAHQRSLPTTSASDATNIRLIMHVITSVLMSR
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgccgtcggggaaccctaatccctccccgagcgctcccttcgagctcggtatg
cttttccgacctccgccaaaccctaatctccccaccaccaccggcgtcttccctggtggc
cccgcccccgccgctgcaacgcaaccgccgcccaccgggccctactcctacccaccggcc
accccacccttccgccgcggcccctatctccactaccccaacgacccccacggcttccaa
ctccccgccgccgccgccgccgccttcgcgaacgctaaccccactgcaaaccctatcccg
aaccccggcccgaacccgggggcccggctgatgcagctgctgggcaacaccgctcccacc
cacctcgattctgcggcgtccatgccgccgtcgtcggagttctccgcggccccggcggcg
ccactcccggcgacgtcgtccgcgccgccggcgaggattctcagcagcaagatgcctcgt
gggaggctgctgggggccggggaccgggcagtgcacgatgttgactggcggctgcccggg
gaggcggagccgccgcagctggaggtgacgcctatcaccaagtacacctcggaccctggc
ctggtgctaggcaggcagatcgccgtgaaccggacgtacatcgtgtatgggcttaagttc
ggtaacatccgtgtgctcaacatcaacaccgcgctccgctcgctccttcgtgggcacaca
cagagggtgacagacatggctttcttcgcagaagacgtccaccgtttagcaagtgcaagt
gtagatgggcgggtatatgtttggaagattgacgagggacctgatgaggaaaataaatca
caaatcacagggaagattgaaattgccatccagattataggagatgctgaaacttatcat
ccgagaatatgctggcattctcataagcaagagattctgtatgttggaattgggaattgc
atcttaagaatggacataacgaaagtgggaagaggaagagacttcggtacagtagagcct
ctgaaatgcccacttgacaagctgattgatggtgtgaacatggttggtaaacatgacaga
gacattactgatctctccatatctcagtggatgacgacgcgtctggcttcagcatcaaaa
gatggcacggtaaaaatctgggatgatcgcaggtcagtccttctgtctgtgctgaaacca
catgatggtcaagcagtgtactcggtttcttttcttacggcacctgaacagccaaatcat
ataaatctcgttacagcaggtcctctcaaccgagaagtaaaaatttgggcctccactaat
gaagaaggttggttgttgccgagtgactcggagacatggaaatgcactcaaacgttggaa
cttgtaagttctctggaacataggtctgaggaggcatttttcaaccaagttgcagtgttg
ccgcaggctagccttattttgcttgcaaatgccaaaaagaatgctatttatgctgtgcat
gttgagtacggcccagatcctgcttcaactcggttggactatatagcagattttacagtt
acaatgcccattttgagtctcacgggaacacatgaaacccaatctgatggtgaacaagca
gttcaagtttactgtgtccagacaatggctatccagcaatatgggttggagttatcactc
tgtctgccacctacagctgataatgctggacctggaagagacccagctctctctcatgta
tatgagagacctccagaaatggcagatgtggagtcttctgcaggaactactccgattgat
tcttctattattgttttgactaaaccatcaagtgatagtcaagccacagaagctgattct
tctctagatgttccatctgtggctcctacatcaaaaatgaatcttgctggatctccagtt
gtcttaagtagacacccttcaggaggtccatctcatggtgatcgtgatgcggaccagtca
tctattggtagaaaggatagctttggaaaggaagagccaggtggccagagtgatggtata
gcaatttcaaatcctcgtcccatgtttcaggtgggagggcatgctacgcacttgataact
ccatctgaaattatttcaggtgtgctcacttctactgaaaaggttgctagtgtcagctct
cagaatgtagaagcggaagcaaaacatatggatgagagaaaatcaaataaaaaatttgaa
cttgaggctgttaaggagacccaaattcatcctgagaaaaaggcgatacctgacaagaat
tcagagcaaactgtagacacaatcagtgaacgcacgataacaactgacaagtacaacata
gaagattcacatcctctgtctgatagatcagtacccacgcttttgaagcagccttctgga
gctggggaggaaaatgttgtgaagagagcaactgaagctcctgagagaactgatggccct
tgtgcttcaaggggcttacagttaccctcagctaccaaagaagggaaagttctacatcct
caagtgtctgggcaattgtctccttctacaagcactttcaactctactgattccttgcat
gaacctcgaagcaatacaaaccctcctactgattcctccctgcaagctactgctattcaa
ggaacactgcaacagcttgtggccatgtatagtgacatgcaaaaacaattgagcacaatt
gtgtctgcaccaattgcaaaggaaggcaaaagaattgaggcatcactaggtcgaaacatg
gagaagtccatcaaggccaacattgatgccatgtgggctcgtttccaggaggaaaatgca
aggcatgaaaagacagaaagagagcgaatgcagcagatggctactctaatagcaacttct
gtaaacaaggatattcctgttatgctggagaagtctctaaagaaagaaatatcttcactg
ggacctgctgttgctcggacaacagcacctatcattgagaagtccttatcttctgctgtt
tctgattcacttcagaaagttctgggtgacaaggttgtgaatcagctagataagtctgta
agcacaaaacttgaagctagtgttgctaggcagatccaaacacagttccatacatccgcc
aagcagacacttcaggacacatttcgctctagctttgagtcatcagttattccggcattt
gaacaatcatgtaagacgatactcgagcaagtagatggtgcattccagaagggcatgtct
gagcacagtgctgctatccagcagcaggttgtgacagcaaatactccattagctcaaact
ctaagggaaacaatcacttcggtgtcatcagtaacccagggtcttacatcagagttactg
gatggccagcgcaagcttttgtcactagttgcatcagggagcccaatactacataacgca
ggtgttttgcagcccagtaatggaccagtgaccgatctccctgaggttgatgctccgttg
gaccctctgaaagagctaggcagactgattactgagcggaaatttgatgaggcatttaca
atggctcttcaaagaagcgacgtatccatagtttcttggttgtgttctcaggttgatttg
caagcattatgtgcaagcgttcctatccctctaaaccaaggggtcctcctagcccttttt
cagcagctagcatgcgacattgccaatgacacatcccggaagcttcagtggatgacaaac
gtcgccgtggcaatcaatccaacagatccaataatcgctatgcatgtgaggccaatattc
gatcaagtctacaacgtcttggcgcaccaacggtcactgccaaccaccagtgcatcggat
gcgacgaatatccgcctaatcatgcatgtgatcacctcagtgctgatgagccgctag
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integrated database retrieval system
