KEGG   Phragmites australis (common reed): 133930507
Entry
133930507         CDS       T10575                                 
Name
(RefSeq) THO complex subunit 4D-like
  KO
K12881  THO complex subunit 4
Organism
paua  Phragmites australis (common reed)
Pathway
paua03013  Nucleocytoplasmic transport
paua03015  mRNA surveillance pathway
paua03040  Spliceosome
Brite
Messenger RNA biogenesis [BR:paua03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     133930507
    TREX complex
     133930507
Spliceosome [BR:paua03041]
 Complex C
  Other components
   EJC/TREX
    133930507
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    133930507
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_3
Other DBs
NCBI-GeneID: 133930507
NCBI-ProteinID: XP_062233152
LinkDB
Position
10:26815358..26820009
AA seq 302 aa
MATSLDVPLDDLIKSRSGRGRGRGRGRGRGRGQGGGRGRDDGQRLARGSWRGRGGGTFRG
RGLGVPSRRPLGVNTRSSTFAIAKSFNKAKTFVWRHDLFEDSMVAAGLSGIESGTKLYIS
NLHYGVTKEDIQELFSEMGHLKHCAVHYDNNRRPTGSAEVIFTRRSEALAALKRYNNVRL
DGKAMKIEMIGADLGLSAAFAPRISVVPGARGRGQREVVMMPGASRFGRGAAGSSSSLPG
WKRGGFVQRGGGQVRGRGRGRGRSSFGQGRGRGYVRKGPVGKSAEQLDKELDNYNSGAMD
VA
NT seq 909 nt   +upstreamnt  +downstreamnt
atggcaacatctttggatgtcccactggatgatttgattaagagcagaagtggaagggga
aggggaaggggaaggggaaggggaagaggcaggggacaaggagggggtcgaggcagagat
gatggccaaaggttggcccgtggttcatggcgtgggcgtggtggtggcactttccgtgga
aggggcctaggggtgccttcacgaaggcctcttggtgttaatactcggtcctcaacattt
gctattgccaagtcattcaataaagccaagacttttgtgtggagacatgatttgtttgag
gatagtatggtggctgctggtctttctgggatagaatctggaacaaagctgtatatttca
aacttgcactatggagttacaaaggaagacatacaggagcttttttctgaaatgggccac
ttgaagcactgtgctgttcattatgacaataataggcgcccaactggttcagctgaggtg
atattcactaggagaagtgaagctcttgccgcattgaaacgatataataatgtgcgcctt
gatgggaaggcaatgaagattgaaatgataggagcagatttgggtctatccgctgctttc
gcaccccgaattagtgttgttcctggtgcaaggggaagaggacagagagaagttgtaatg
atgcctggtgcaagtcggtttggtcgaggtgcggcgggctcatccagttcgcttcctggg
tggaagcgtggaggttttgttcaaagagggggaggacaagtgcgcggtcgcggacgtggc
cgtgggcgtagtagctttggtcaggggcgtggacgtggctatgtacggaagggacctgtg
gggaaatcagctgaacaattggacaaggagcttgacaactacaattctggtgcgatggat
gtcgcctaa

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