Phragmites australis (common reed): 133930516
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Entry
133930516 CDS
T10575
Name
(RefSeq) NF-X1-type zinc finger protein NFXL1-like
KO
K12236
transcriptional repressor NF-X1
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
paua03000
]
133930516
04121 Ubiquitin system [BR:
paua04121
]
133930516
Transcription factors [BR:
paua03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
133930516
Ubiquitin system [BR:
paua04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
NFX1 proteins
133930516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_NFXL1
zf-NF-X1
NCBP3
R3H
Motif
Other DBs
NCBI-GeneID:
133930516
NCBI-ProteinID:
XP_062233162
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All DBs
Position
10:27040571..27044419
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AA seq
1112 aa
AA seq
DB search
MQPSTDCRRGGGPVAAPSSRPVWRPRSSAPAPTAGPDAAAPILPLPTPASEARPPNRRPR
RPNHRNANSNRGGAPPGPQEHNNNNTGHRRRGPPQERPAPAAPSNARAQAPSPAPAPKAV
GGDGTVPQLVQEIQDKLARGAVECMICYDMVRRSAPVWSCGSCFSIFHLPCIRKWARSPA
SAVDGSAESAAASSWRCPGCQSVHATPARDLAYTCFCGRLRDPPNDLFLTPHSCGELCSK
PLERAETSAKGHDGAATRCPHVCVLQCHPGPCPPCKAFAPDRPCPCGKQTIVRRCADRST
PVTCGRHCERLLPCRRHRCEKVCHTGPCGDCSVVISARCFCGKKKETLLCGDMVVKGKLS
EEDGVFSCSEVCGHTLACGYHACQDMCHPGPCGECELTPGKVTTCHCGKTRLEAMRANCL
DPIPTCDKICDKELPCGVHRCKVNCHEGECPPCLVRVEQRCRCSSSGRMVECYKVSMEEF
HCNKPCGRKKNCGRHRCSECCCPLSGKFAQLEGGNWDPHLCQISCAKKLRCGQHVCQLLC
HSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTPTPSCPHQCSVPQPCGHPASHSCHFGD
CPPCVVPVMRECIGGHVMLRNIPCGSKDIRCNQPCGKNRQCGLHACTRTCHPSPCDQPPS
NGDASSSSGVKASCGQVCGAPRRECKHTCTAPCHPSSPCPDLRCEFPVTITCSCGRITAT
VPCGAGGTSIGDNMFEVSIIQKLPMPLQPVESNGRRVPLGQRKLSCDEECAKMEKKRVLA
EAFDITPPNLDALYFGENSNASDLVSDLFRREPKWVMAIEERCKFLVLGKTRGNSSSNLK
LHIFCHMMKDKRDAIRLIADRWKLSVQAAGWEPKRFVTIHVTPKSKPPARILGSKAGAPV
TAAHPYFDPLVDMDPRLVVAMLDLPREADVNALVLRFGGECELVWLNDKNAVAVFNDPAR
AATALRRLDYGSAYQGAAMFLPSSAQAPSSGNVWVAGQKDGVLAAKSSGNPWKKATASEP
DRSSGDWTGVAGHAPAPGWRGANAAAQVMGTPNRWNVLESDAVTSSGPGDKRRPAPCADA
GHSAVPNAGNAGPSVSKLQPDVVVDDWEEACE
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccctccaccgattgccgccgcggaggcggcccggtcgcggccccatcctcccgc
cccgtgtggcggccccgctcgtctgcccccgcccccaccgcgggcccggacgccgccgcc
cctatcctgcccctccccaccccggcctcggaggcccggccgccgaaccgccgcccgcgc
cgcccgaaccacagaaacgcgaacagcaatcgcggcggcgcccctccggggccgcaggag
cacaacaacaacaacacgggccaccgtcgccgcggcccgccgcaggagaggccagctccc
gcggcgcctagtaacgcgcgtgcgcaggcgccgtccccagctcctgcgcccaaggcggtt
gggggcgatgggacggtgccgcagctggtgcaggagatccaggacaagctggcgcggggc
gcggtggagtgcatgatctgctacgacatggtgcggaggtcggcccccgtatggtcctgc
ggcagctgcttctccatcttccacctcccctgcatccgcaagtgggcgcgctccccggcc
tccgccgtcgacggctccgcagagtccgccgcggcctcctcctggcgctgccctgggtgc
cagtccgtgcacgccaccccggcccgcgacctcgcctacacctgcttctgcgggcgcctc
cgtgacccccccaacgatctcttcctcacgccccactcctgcggtgagctctgctccaag
cctctcgagagggcggaaacgagcgccaagggtcatgatggtgccgccaccaggtgcccg
cacgtctgcgtcctgcagtgccatcctggcccatgtccgccctgcaaagctttcgcgcca
gaccggccgtgcccctgcgggaaacagactatcgtgcggagatgcgcggaccggagcacc
cccgtgacctgtggccggcactgcgagcggttgctgccctgcagaaggcaccgctgtgag
aaggtctgccacaccggtccctgtggggattgctctgttgtcatctctgcacgatgcttc
tgcgggaagaaaaaagagacgttgctctgtggggacatggtggtgaaggggaagctgtcg
gaggaggatggtgtgttctcatgcagtgaggtgtgtggccacaccctcgcctgtgggtat
catgcctgccaggatatgtgccatccagggccttgcggggagtgtgagctcacgccaggg
aaggtcactacatgccattgtggcaagacaaggctggaggcgatgagggcaaactgcttg
gacccaatcccgacctgtgacaagatctgcgataaggaattgccttgtggggtgcatagg
tgcaaggtcaattgccatgagggagagtgcccgccttgcttggtgcgtgtcgagcagagg
tgccgctgtagctcttcaggccggatggtggagtgctacaaggtctcaatggaagagttc
cactgtaacaagccttgtggtcgcaagaagaactgtgggaggcatcggtgcagtgagtgt
tgttgcccactgtcggggaagttcgcacagcttgaaggtggtaactgggatccccatctc
tgccagatatcatgtgccaagaagctccggtgtgggcagcatgtatgccagctgctctgc
cacagtggtcactgcccgccctgcttggagaccatattcactgatctcacttgtgcctgt
ggcagaacttctatcccgccaccgctgccttgtggcacaccaactccatcatgcccgcat
cagtgctcagtcccccagccgtgcggtcatccagcctcacattcatgccattttggggac
tgcccgccttgcgttgtgccagtaatgagagaatgcattgggggacatgtgatgttgagg
aacatcccttgtggatcaaaggatatcaggtgcaaccaaccatgtgggaagaaccggcaa
tgtggattacatgcttgcaccaggacttgccatccttccccctgtgatcagccaccttca
aatggagatgctagctcaagctctggggttaaagcttcttgtggacaggtatgtggtgcc
ccaaggagggaatgtaagcacacgtgcactgccccatgccacccatcgtcaccttgccca
gatttgagatgtgaattccctgtgactattacctgttcttgtggccgtatcactgcaact
gttccctgcggtgctgggggaacctccattggtgataatatgtttgaagtctccatcata
cagaagttgccaatgcctctccagccagtggaatcaaatgggaggagggtgcctcttggg
cagaggaagctttcttgtgatgaggagtgtgcaaagatggagaagaagagggtccttgct
gaagcatttgacattaccccacccaatttggatgcattgtatttcggtgagaactcaaat
gcatcagatttggtttctgatctgttccgacgtgagccgaagtgggtgatggccatagaa
gagaggtgcaagttccttgtacttgggaaaacgagaggcaattcttcaagcaacctcaaa
ctgcatatcttttgtcacatgatgaaggacaagagagatgctatcaggctcattgcagat
aggtggaagctttctgttcaggcggctggttgggagcctaagcgttttgttaccatccat
gtcacacccaagtcgaaaccgcctgcccgcatcctgggctccaaggcaggcgcccctgtc
actgctgcccatccttactttgatccgctggttgacatggatccgaggctggttgttgcc
atgctggacctgccacgggaggctgatgttaatgcccttgtcctaaggtttggtggagag
tgtgaattggtctggctgaacgacaagaatgcagtggccgtattcaatgatccagctaga
gcagcaacggcgctgaggcggttagactatggctctgcttaccagggcgctgcaatgttt
ttgccaagcagcgctcaggcaccttcgtcaggcaatgtgtgggttgcaggccagaaagat
ggagtgctcgctgctaagagcagtggcaatccatggaagaaggccactgcttctgagcct
gaccggtcctctggagactggactggtgtggctggccatgctccggcgccagggtggaga
ggtgccaatgctgccgctcaagtgatggggactccgaaccgatggaatgtcctggagtct
gatgctgtcacgagctctggtccaggtgacaagcggaggcctgctccttgcgccgatgct
ggacacagcgcagtaccaaatgctgggaacgctgggccatcagtgagcaagctgcagccg
gacgtcgtggtggatgactgggaagaagcttgcgaatga
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