Paenibacillus sp. URB8-2: PUR_01660
Help
Entry
PUR_01660 CDS
T10751
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
paub Paenibacillus sp. URB8-2
Pathway
paub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PUR_01660 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paub03019
]
PUR_01660 (rnr)
03016 Transfer RNA biogenesis [BR:
paub03016
]
PUR_01660 (rnr)
Enzymes [BR:
paub01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PUR_01660 (rnr)
Messenger RNA biogenesis [BR:
paub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PUR_01660 (rnr)
Transfer RNA biogenesis [BR:
paub03016
]
Prokaryotic type
tRNA degradation factors
PUR_01660 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
OB_Dis3
S1_RRP5
OB_HELZ2
SelB-wing_2
Motif
Other DBs
NCBI-ProteinID:
BCG56741
LinkDB
All DBs
Position
185197..188001
Genome browser
AA seq
934 aa
AA seq
DB search
MTMMITQENLLDFMRETAYKPMTYEELIDHFHFAEEEVLKEFNVLLNSLEQEGRIVLTRT
RRYGVPERMDLLRGRLQAHAKGFAFLIPDDREHPDVYIHANDIKSAMNGDIVLVRVTSRS
HAGGRMEGEVVRIVRRGVLQTVGVFQNLETYGFVLPDDKRINRDIFIPKESFNGAVDGEK
VVVRIVNYPEGRAAAEGEIIEILGHKDDPGVDILSVIRKHQLPEAFPEEVMAGANAAPDS
ITEEEIVEQGRRDLRGLNIVTIDGEDAKDLDDAVNVARLENGHYKLGVHIADVSYYVREN
SPLDKEAYDRGCSVYLVDRVIPMLPHRLSNGICSLNPQVDRLTMSCEMEFDENMKVVKHD
VFTSVIRTKERMTYTNVRKILLDEDPELLKRYAPLIEDFRLMREIAMKLRDARMRRGAVD
FDFQESKVIVDENGKAVDIVKRERSIAEQIIEEFMLAANETVAEHFHWLKVPFLYRIHED
PDPEKLQNFMAFAANFGYHVKGRGNSVHPRALQKLLEDIQGTKEQTVISTMMLRSMKQAK
YDAESTGHFGLAAEYYSHFTSPIRRYPDLVIHRVMREVLEGGGALSEKRQEYLASRMPDI
AQQSSERERVAVEAERDTEQLKKAEYMLDKVGEEFEAMVSSVTSFGMFVELENTVEGLIR
LSNLTDDYYHFDEGHMALIGERTSKVFRIGDEVKIRVAKVNMDDHTIDFELVDMKPRAAG
ERRSGGFGGGRGGKGGRDRRGGHSAPAATGAGGGKSRGGGKGGGAAAGAGGRGKRGRGGR
VLGADQAGGAAERSGGRARGGEAAAGRSKGNGGSLAAGAGPGAGARSPKGEAGDAGGSRG
ISFGSGKGGYGAPPSGSNGRGDVYTGINSDTKFRTREDLGGDFGGAGAAGGKGRRKRKSK
NGVFIGDSVTPGNVEAAADFGTKSSEGRKRKKKK
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
gtgacgatgatgataacacaagagaatctgctggatttcatgcgggaaaccgcttataaa
ccgatgacttacgaggaattgattgaccattttcattttgcggaagaagaggtactgaag
gagtttaacgttctgctgaactccctggagcaagaaggacggatcgtgctgacccgtacc
agacgctatggcgtgccggagcggatggacttgctgcgcggacgtctacaggcccatgcg
aagggctttgcctttttaatacccgacgaccgggagcatcccgacgtgtacattcatgcc
aacgatatcaaaagcgccatgaacggcgatatcgtccttgtccgggttacctcgcggagc
catgccggcggccggatggaaggtgaagtcgtgcgcattgtgcgcagaggcgtgctgcag
acggtcggcgtgtttcagaatctggagacttacggctttgtgctgccggatgataagcgg
attaaccgcgatatttttatcccgaaggaatcgtttaacggtgcagtcgatggggaaaaa
gtcgtggtccgcatcgtaaactatccggaagggcgcgcggcggcggaaggggaaattatc
gagattctggggcataaggatgatcccggcgtcgatattttgtctgtcatccgcaagcat
cagctgccggaggcttttcctgaagaagtcatggccggagcgaatgccgctcccgattcc
attacggaagaagaaatcgtggaacagggccgccgcgacctgcggggcctgaatatcgtc
accatcgacggggaagacgccaaagacctggatgacgcggtcaacgtcgcccgtctggag
aacggccattacaagcttggcgtgcatattgccgacgtcagctattatgtgcgcgagaac
tcgccgctggataaggaagcgtatgaccggggctgtagcgtctatcttgtcgaccgggtc
attccgatgctgccgcaccgtctgtcgaacggcatctgctctttgaatccgcaggtggac
aggctgacgatgtcctgtgagatggaattcgacgagaatatgaaggtcgtgaagcacgat
gtttttaccagcgtgatccgcaccaaggaacggatgacttacaccaatgtacgcaaaatt
ctgctggatgaagacccagagctgctgaagcgctacgctccccttattgaggacttccgg
ctgatgcgtgaaattgcgatgaagctgcgggatgcgcgtatgcggcgcggcgcggtcgat
tttgacttccaggagagcaaagtcatcgtcgacgagaacggcaaagcggtcgatatcgta
aaaagggaacgctctatcgcggagcagatcattgaggaattcatgctggcggcgaacgag
acggtggctgagcatttccactggctcaaggttccgttcctgtaccggattcacgaggac
ccggatcccgagaagctgcagaacttcatggcgttcgcggccaacttcggctatcacgtc
aagggacggggcaactccgtgcatccccgggcgctgcaaaagctgctggaggatattcag
ggaacgaaggagcagacggtcatcagcacgatgatgctccgctccatgaagcaggcgaag
tacgacgcggagagcacgggacatttcgggctggctgccgaatattattcccacttcacg
tcaccgatccggcggtatcccgacctcgttattcaccgggttatgcgcgaggtgctggag
ggcggcggggcgctcagtgagaaacgccaagagtatctggcgagccggatgccggacatc
gcccagcagtcctccgagcgcgaacgcgtcgcggtagaggcggagcgggatacggagcag
cttaaaaaggcggagtacatgttggacaaggtcggcgaggaattcgaggcgatggtcagc
agcgtgaccagcttcggcatgttcgtcgagctggaaaataccgtcgaagggctgatccgt
ctgagcaatctgacggatgattattaccacttcgacgagggtcacatggcgctcatcggc
gagcgcacctcgaaggtgttccgcatcggcgacgaggtgaagatccgcgtcgccaaggtg
aacatggacgaccacacgatcgacttcgagctggtcgacatgaagccgcgcgcggcaggc
gagcgccgcagcggaggctttggcggcggccgcggaggcaagggcgggcgcgaccgccga
ggcggccacagtgcgccggctgccactggcgccggaggcggcaagagccgcggcggcggt
aaaggcggcggagccgccgccggtgcgggcggccgcggcaaacgaggccgcggcgggcgc
gtactcggcgccgaccaggccggaggcgccgccgagcgcagcggcggccgggcacgcggc
ggcgaagcggcggccggccggagcaaaggcaacggcggctcattggccgctggcgcaggg
ccgggcgctggtgcgcgcagcccgaagggcgaagccggggatgccggcggttcccgcggc
atcagcttcggctccggcaagggcggctacggcgccccgccaagcgggtcgaacggccgc
ggtgacgtgtacaccggcatcaacagtgacacgaagtttcgtacccgcgaggacctcggg
ggcgacttcggtggcgctggagctgcaggaggcaaaggccgacgcaagagaaaatcgaaa
aacggcgtctttatcggcgattccgtaactccgggcaacgtcgaggccgctgccgacttc
ggtactaaaagcagcgaaggcaggaagcggaagaagaaaaaataa
DBGET
integrated database retrieval system
