Paenibacillus sp. URB8-2: PUR_10710
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Entry
PUR_10710 CDS
T10751
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
paub Paenibacillus sp. URB8-2
Pathway
paub03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
paub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PUR_10710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paub03400
]
PUR_10710
Enzymes [BR:
paub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PUR_10710
DNA repair and recombination proteins [BR:
paub03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PUR_10710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Dis3l2_C_term
Motif
Other DBs
NCBI-ProteinID:
BCG57646
UniProt:
A0A810DVX9
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All DBs
Position
complement(1197030..1197914)
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AA seq
294 aa
AA seq
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MPAAVKGSITIEGQTVPITNPDKPLWPERGITKRIYLEKLAALSPYLLRYLKNRLLTVIR
YPHGVPGKSFYQKNAPDPLPPFVRTVMHEEINYISLDGLPGLLWLGNLAALEFHPSLHYA
GSSLPCEWMIDLDPSREVEPRIMEAAAIVGKVLNSLGLASVPKTSGATGVQIIVPIKQGV
SFDELRKVGHFVGRYVTEKHPGLFTLERLKKQRGDKIYFDYLQHYGGKTLAAPYTPRARP
LATVSTPLTWDEVESNVSPEDFHLLNIEERLRAKGDLISKLPPQPVELVIAGLR
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgccagccgccgtcaaaggctccattaccatcgaaggacaaacggtccccattaccaat
cccgataaaccgctgtggccggagcgcggaataaccaaacgcatctatctagagaagctt
gccgccctgtcgccgtatttgctgcgctatctcaagaaccggctgctgacggtgatccgc
tacccgcatggagtcccgggcaagtccttttaccaaaagaacgctccggacccgctgccg
ccctttgtccgcaccgttatgcatgaagagattaattacatctcgctggacgggcttccc
gggctgctctggctgggcaatctggccgccctggagtttcatccctcactgcattatgcc
ggcagcagcctgccctgcgaatggatgatcgaccttgatccttcccgtgaggtggaaccg
aggattatggaagcggcggcgattgtcgggaaggtgctgaattcgctcgggctggcttcg
gtgccaaagacgtcgggagcgaccggcgtccagattattgtgccgattaaacaaggagtt
tcgtttgacgaactgcggaaggttgggcattttgtcggccggtatgttacggagaaacac
cctgggttgttcacactggagcggctcaagaaacagcgcggagataaaatctacttcgat
taccttcagcattacggcggcaagacgctcgccgccccttataccccccgcgcccgtccg
ctggctaccgtatccacgcccctgacatgggacgaggttgaaagcaatgtctcgccggag
gattttcatctgctcaatattgaagaacgcctgcgcgccaagggcgatctgatctcgaag
ctgcctccgcagccggtggagcttgttatcgccggcctgcggtaa
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