Paenibacillus sp. URB8-2: PUR_19630
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Entry
PUR_19630 CDS
T10751
Name
(GenBank) DEAD/DEAH box family ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
paub Paenibacillus sp. URB8-2
Pathway
paub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PUR_19630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paub03019
]
PUR_19630
Enzymes [BR:
paub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PUR_19630
Messenger RNA biogenesis [BR:
paub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PUR_19630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BCG58538
UniProt:
A0A810DZU1
LinkDB
All DBs
Position
2196053..2197492
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AA seq
479 aa
AA seq
DB search
MNFKDLNLIPPILKALDKENYSTPTPIQEQSIPSVLAGRDLFGCAQTGTGKTAAFSLPII
QLLQEQPSRTGSARHIRSLILTPTRELALQIADNIGAYSKFTSLRCTAIVGGVSQRVQER
ALGLGTDILIATPGRLIDLINQKRVDLQYVQILVLDEADRMLDMGFINDVKRIISKMPVK
KQTLFFSATMPPEIANMVKSLLVNPVKVEITPVSSTVDRIKQSLYLLEKGTKQKLLNRLL
QDQTIVSALVFTRTKRGADRVTRELTKVGITAQAIHGNKSQTDRQNSLRNFKNGTTRVLV
ATDIAARGIDIDELSHVINYNLPQIPETYVHRIGRTGRAGLSGTAISFCETEELPFLKDI
EKLIGKRIPEVKDHPYRMERTPESLKRDRLSKPAVAKPAKSSKPSKSSNPAKSFPPAKST
ANRDRKPKSEGFKQGNPIHGKANGKTNGKANTKANAKARETARGNGRTTRTAASNKAGR
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaaagatttgaatctgattcctcccattttgaaagctttggacaaagaaaat
tattcaacaccgacacccatacaggagcagtccattccgtccgttttagcaggcagagat
ttgtttggctgtgcgcagaccggaacggggaaaaccgcggctttttctttgccgattatc
cagctgctccaagagcagccaagccgaacgggttcagcaagacatatccgctcattaatt
ctcaccccgacgagggagctggcgctgcaaatcgcggacaatattggggcctacagtaag
tttacctctttacgctgcacagcgatcgttggcggtgtatctcaaagagtccaagaaagg
gcactgggtctcggaacggatatcctgattgccacaccgggaagactgatcgatctgatc
aatcagaagcgggtggatctgcaatatgtgcaaattctggtgctggatgaagccgataga
atgctggatatgggctttatcaacgatgtgaagcggattatttccaagatgcccgtcaaa
aaacagacgctcttcttctcggcaacgatgcctccggaaatcgccaacatggtcaaatcg
cttctggtgaatccggtgaaggtcgaaattactccggtatcgtctacggttgaccgtatc
aagcagtcgctctatctgctcgaaaagggcaccaagcagaaactgttgaaccggctgctg
caggatcagacgattgtttccgccttggtgtttacacggacgaaacgcggcgcggaccgt
gtcacccgggaattgaccaaagtgggcattaccgcacaggccattcatggcaacaagtcg
caaacggaccgtcagaattccctccgaaactttaaaaacgggacgacccgcgtgctggta
gcgacggacatcgccgcccggggaattgatattgacgagctgtcgcatgtgatcaactac
aatctgccccagataccggagacttatgttcaccggatcggccgtaccggcagggcggga
ctgagcggaacggcgatttctttttgcgaaaccgaagaacttcccttccttaaggatatt
gagaaattaatcggcaaaaggattcccgaagtaaaggatcatccttatcggatggagcgt
actccggagtcccttaagagggaccggttatcgaaaccggcagtcgccaaacctgcaaaa
tcgtccaagccgtccaaatcgtcaaatccggccaaatcgttcccgcctgccaagtccacg
gcgaaccgcgaccgcaagcccaaatccgaaggatttaagcaaggtaatccgattcatggg
aaggcaaacggcaagacaaacgggaaggccaacactaaggcaaacgccaaggcgagggaa
acggctagaggaaacggcagaacgacgagaactgcagcgagtaacaaagcgggcagataa
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