KEGG   Parerythrobacter aurantius: WAB17_11915
Entry
WAB17_11915       CDS       T11164                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
paui  Parerythrobacter aurantius
Pathway
paui02024  Quorum sensing
paui03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:paui00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    WAB17_11915 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    WAB17_11915 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:paui03019]
    WAB17_11915 (hfq)
   03036 Chromosome and associated proteins [BR:paui03036]
    WAB17_11915 (hfq)
Messenger RNA biogenesis [BR:paui03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     WAB17_11915 (hfq)
Chromosome and associated proteins [BR:paui03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    WAB17_11915 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 DUF5608
Other DBs
NCBI-ProteinID: WXK59321
LinkDB
Position
2397519..2398055
AA seq 178 aa
MSTGKTLSARPRPAEPVGPETRQTGLQDAFLNLLRRNKTPVTVFLVKGVKLQGIVTWFDN
FSMLLRRDGQSQLVYKHAISTIMPGAPIDPAQFGSQDGNKKQRLLQDVFLGRVRDAGVQV
TMFLINGVMLQGRIGAYDLFCVLLERDGYVQLAYKHAVSTVQPASAVDLTDWEEDEED
NT seq 537 nt   +upstreamnt  +downstreamnt
atgtccactggtaagaccctatctgcgcgtccgcgtccagcggaacccgtcggtcccgaa
acccgtcagacgggcttgcaggacgcctttttgaacctgctccgccgcaacaagacgccg
gtcaccgtattcctggtcaaaggcgtgaagctgcagggcatcgtcacctggttcgacaat
ttctccatgctcctgcggcgcgacggccagtcgcagcttgtgtacaagcatgccatcagc
accatcatgcccggtgcccccatcgatcccgcgcaatttggcagccaggacggcaacaag
aagcagcgcctcctccaagacgttttcctgggccgtgttcgcgacgccggggtgcaggtc
accatgttcctcatcaacggcgtcatgctgcagggacggatcggggcctatgacctgttc
tgcgtgctgctggaacgcgatggctatgtccagctcgcctacaagcacgccgtttccacc
gtgcagcctgccagtgcggtcgacctgaccgactgggaagaggacgaagaagactga

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