Parerythrobacter aurantius: WAB17_12780
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Entry
WAB17_12780 CDS
T11164
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
paui Parerythrobacter aurantius
Pathway
paui03410
Base excision repair
paui03430
Mismatch repair
paui03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paui00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
WAB17_12780 (recJ)
03430 Mismatch repair
WAB17_12780 (recJ)
03440 Homologous recombination
WAB17_12780 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paui03400
]
WAB17_12780 (recJ)
DNA repair and recombination proteins [BR:
paui03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
WAB17_12780 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
WAB17_12780 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WAB17_12780 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
WXK59484
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Position
2568512..2570299
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AA seq
595 aa
AA seq
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MASRTHSCVFGVSTSLSGKTWQWRGGNMDLGGGVAGLEDDIVTQLLLSRGVEREELELHR
SPTLSAFLPDPSCFRDMDVAAERIAQAILSREAVTIYGDYDVDGATSAALLVKLFRLLGH
DARYYIPDRLLEGYGPGGEALVRIGQGGSSLVVTVDCGAMAHEALTMARDAGVDVIVVDH
HKCPPDLPPAIALVNPNRLDESDLAASHGHLAAVGVAFILAIAVVRTLRNCGYFAERAEP
DIRGLLDLVALGTVADVAALRGLNRAFVSQGLKVMARRNNIGMSALIDASRLKRAPVCSD
LGFALGPRINAGGRVGESTLGVRLLTTEDADEAREIAAQLSALNEERRAIEAEVQEAAEQ
QLAAQHNRSVHILAGEAWHPGVIGIVAGRIKEKTGKPSIVIALDKTTGQGKGSGRSIAGV
DLGAAIIAAREQGLPVAGGGHAMAAGLTVAADGVEALADWLEERLAATVAGAIAGQTLAL
DLAVAPKGLTPDLVSSLERAGPYGMGWPGPRVAVGPVQLVKADTVGNDHLRLIAAGPDGG
SIKAIAFRAASTDWGQAILHNGRGRKLWLAGRAKIDDWGARPAAELHLEDAAWAD
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgcgcacgcattcctgtgtcttcggggtttcgacgtccctttccggcaaaacg
tggcagtggcgcggcgggaacatggatctcggcggaggggttgctgggctggaggatgac
atcgtcacccagttgctgctgtcgcgtggtgtcgagcgggaagaactggagctgcaccgg
tcccccacactgagcgccttcctcccggacccgtcttgttttcgcgacatggatgtcgcg
gccgagaggattgcgcaggcgatactctcgcgcgaagcggtcacgatttacggcgattac
gatgtcgatggcgcgaccagtgccgccttgcttgtaaagttgtttcgcctgctcgggcac
gatgcgcgatattacatcccggaccgtctgctggaaggatatggaccgggcggcgaagcg
ctggtgcggatcggtcagggcggatcgagcctcgtcgtcacggtcgactgcggcgcaatg
gcccatgaggcactgacgatggcgcgggacgccggcgtggatgtgatcgtggtcgaccac
cacaagtgcccgcccgacctgccccctgcgatcgcgctggtgaaccccaaccgcctcgac
gaaagcgacttggcggcatcgcatggtcaccttgccgccgtaggggtagcgttcattctc
gccatcgcagtagtgcgcaccttgcgcaactgcggctatttcgccgagcgagccgagccg
gatatccgggggctgctcgatctggtggcgctgggaacagtcgcggatgtcgctgcgctg
cgcgggctgaaccgcgctttcgtctctcagggtctcaaagtcatggcgcggcgcaacaat
atcgggatgagtgcgctcatcgatgccagccggctcaagcgggcgcctgtatgcagcgac
ctcggtttcgctctcggtccccggatcaatgcaggtggacgggtcggggaatcaactctc
ggcgtgcggttgctgacgaccgaggatgccgatgaagcgcgggagatcgcagcgcagcta
tcggcgcttaatgaagagcgtcgcgcgatcgaggctgaggtgcaggaggccgccgagcag
caacttgcagcccagcacaatcggtcggtgcacatacttgccggcgaggcctggcatccc
ggggtcatcggcatcgtggccgggcggatcaaggaaaagaccgggaagccgagcatcgtc
atcgcgctcgacaagactaccggtcagggcaaggggtccggccgctcgatcgcaggcgtc
gatctcggtgctgcaatcatcgctgcgcgggaacagggcttgcccgtggccgggggcggt
catgccatggcggcagggctgactgtcgcggcggacggcgtcgaggctcttgcggactgg
ctggaagaaaggctggctgcaacggttgcaggcgccatcgccggtcaaacgctggcgctc
gacctcgcagtggcgcctaaagggctgacgcccgacctcgtctcttcgctggaacgggcc
ggcccatacggtatgggctggcccggtccgcgcgttgccgtaggaccagtgcagcttgtt
aaggctgacacggtcggcaacgatcacctgaggctgatagcagcaggtcccgacggcggc
tcgatcaaggcgatcgcgtttcgggcagcctcgaccgactggggacaagcgattctccac
aacgggcgcggccgcaagttgtggctggcagggcgcgcaaagattgacgattggggcgcg
cgcccggccgccgaactgcacctcgaagacgctgcctgggcagactga
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