Parerythrobacter aurantius: WAB17_13380
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Entry
WAB17_13380 CDS
T11164
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
paui Parerythrobacter aurantius
Pathway
paui03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paui00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WAB17_13380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paui03019
]
WAB17_13380
Enzymes [BR:
paui01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WAB17_13380
Messenger RNA biogenesis [BR:
paui03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WAB17_13380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Utp25_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WXK59593
LinkDB
All DBs
Position
complement(2689161..2690636)
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AA seq
491 aa
AA seq
DB search
MTTTFETLGLSQPVLQALDMKGYNTPTPIQEQAIPLLLEGRDLLGIAQTGTGKTAAFMLP
SIDNLREADRQTPFKSCRMLVLAPTRELAGQIAQSAKDYGAMAGLKVQSIVGGTSVGKDR
NKLHRGTDILVATPGRLLDLIDQRAFALNGVEILVLDEADQMLDLGFIHALRKIVPMLPK
ERQTLLFSATMPASIKELSKNYLTDPAHVSVTPAATTAERIDQYLFMVQQDEKQSLLEMI
LKGRHPVPGKQERMLVFTRTKHGADRVVKKLAQVGIAANAIHGNKSQPQRERALAEFKSA
RVPVLVATDVAARGIDIPGVSHVINYELPNVPGQYVHRIGRTARAGKDGIAIAFCAEDER
AYLKDIRKNTDAEFERLALPDNFRAVVEGVGPTKREQQQRGPRVQPKPRGSSAARAGGDA
RGPVENPVKKQGSPGSKHPNRAGKPKHAGQGDAGRAPSGKPGSNRRRRFGGRGNGGNGGG
NGGSGQQRRQG
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgaccacaactttcgaaaccctcgggctttcgcagcctgtgctccaagccctcgacatg
aagggctacaacaccccgaccccgatccaggaacaggccattccgttgctgctcgaaggt
cgcgacctgctcggcatcgcccagaccggcaccggcaagaccgccgccttcatgctgcca
agcatcgacaatctgcgtgaggctgaccggcagacgccgttcaagtcctgccgcatgctg
gtgctggccccgacccgcgaactggccgggcagatcgcccagtcggccaaggattatggc
gcgatggcgggcctcaaggtccagtcgatcgtcggcggtacctccgtcggcaaggatcgc
aacaagctgcaccgcggcaccgatatcctcgtcgccacaccgggccgcctgctcgatctg
atcgaccagcgcgcctttgcgctgaacggggtcgagatcctcgtcctcgacgaggccgac
cagatgctcgacctcggcttcatccatgccctgcgcaaaatcgtgccgatgctgcccaag
gaacgccagacgctgctgttcagcgccaccatgccggccagcatcaaggaactgagcaag
aactacctgaccgatccggcgcatgtctcggtcaccccggcggcgaccacggcggaacgg
atcgaccagtatttgttcatggtccagcaggacgagaagcagtcgctgctcgagatgatc
ctcaagggccgccacccggtgccgggcaagcaggagcgcatgctcgtcttcacccgcacg
aagcatggtgcggaccgcgtggtgaagaagctggcgcaggtcggcatcgcggccaacgcc
atccacggcaacaagagccagccacagcgcgaacgcgccctggccgagttcaagagcgcc
cgcgtacccgtgctggtggccaccgatgtagccgcgcgcgggatcgacatcccgggcgtc
agccacgttatcaattacgaactgcccaatgttccgggacagtatgtccaccgcatcggc
cgcaccgctcgcgccggcaaggatggtatcgccatcgccttctgcgccgaggacgaacgc
gcctatctgaaggatatccgcaagaataccgatgcggagttcgagcggctcgccctgccg
gacaacttccgtgccgtggtcgaaggcgtcggcccgaccaagcgtgagcagcagcagcgc
ggcccccgcgtccagcccaagccgcgcggtagcagcgcagctcgcgctggtggcgatgcg
cgcggcccggtggagaacccggtgaagaagcagggcagccccggcagcaagcaccccaat
cgtgcaggcaaacccaagcatgccggccagggtgatgccggtcgcgcaccgagcggcaag
ccgggcagcaaccgtcgtcgtcgcttcggcggtcgcggcaacggtggcaatggcggcggc
aacggcgggagcggccagcagcgccgccaagggtaa
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