Paenibacillus aurantius: MJA45_00955
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Entry
MJA45_00955 CDS
T09594
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
paun
Paenibacillus aurantius
Pathway
paun03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
paun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MJA45_00955 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paun03400
]
MJA45_00955 (mfd)
Enzymes [BR:
paun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MJA45_00955 (mfd)
DNA repair and recombination proteins [BR:
paun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MJA45_00955 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
WNQ11676
UniProt:
A0AA96LDH9
LinkDB
All DBs
Position
204388..207909
Genome browser
AA seq
1173 aa
AA seq
DB search
MQDLLQAFAADIDFQSILSGVRSGMREQLIAGLAGSSRQVMMAALMQEQKQPMLVVTHNM
FAAQKITEDLMECLSPEQVLLFPAQEMLAVEAAAASPEMLSQRIDALTRLASGFTGIVVT
PYAGLRRLLPVSSVFTESQVTVKVGDTLDLDAFLTQLTMLGYERVERVENKGEMSVRGGI
VDLYPLTSEVAFRIELFDIDVDSIRSFEVADQRSIDKLGELTVTPCKEIIADRKRFQNAS
AHAYDLLEVQLEKMVDRQAKQRLRDEIRDEISRLEQGQHFAGIYKYISLLYPEQQTLLDY
LPKDALLIIDEPARLLETAKQLERDEAEWVTGLLQEGKSLPAFVISKPYESLLQRKPHQT
LYLSLFLRQVPQTQPQNIVNFTCRVMQNFHGQMNLLKAEMDRWKKAGANVQLLANGEERK
ERVKRVLSDYQIDEPVIVNGNLQTGFELPSIKLVVITEGEMFSQKQRKARKVEKRIENAE
RIKSYQELKVGDYVVHVNHGIGKYVGIGTLEVAGIHKDYLHILYAGGDKLSVPIDQIDLI
QKYVGSEDKEPKIYKLGGSDWNKVKSKVRSSVKDIADELVQLYAARQSTPGHPFSKDSTY
QDEFESIFPYEETRDQLRAIEEIKADMEKPRPMDRLLCGDVGYGKTEVAVRAAFKAAIDG
KQVAILVPTTILAQQHYETFRERFSGYPFNIQVLSRFRSKKEQNETMKGIKNGTVDVVIG
THRLLSADVQFKELGLLIVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMSMLG
VRDLSVIETPPENRFPVQTYVLEHSNALIREAIERELAREGQVYYLYNRVQGIQQMADQI
SMLVPDAKVIVAHGQMTEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDAD
KMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRD
LSIRGAGNLLGAEQHGFIASVGFDMYSQMLAEEINKRKAEMGGEEAAPEEAWTTQLELHL
DAYLPSDYIYDSMQKIEIYKKVATITTLEEADDLHDELVDRFGDLPQAVSNLLDVARIKV
YGSKYRIELISQRGDDFHIKLHADQNGTLDGKRLVLLSAKFDNRIKVIPGPQILIEIKGK
GYKPEQSIELLVKFLEQYRDVHKPKGELQNAAN
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagatttgttacaggcttttgccgccgatatagattttcaatcgattctgtccggg
gttcgttccgggatgcgcgagcagctgattgcggggcttgccggctcctcgagacaagtg
atgatggccgctctgatgcaggagcagaagcagccgatgctggtcgtcacgcataatatg
ttcgcggcacagaaaataacggaggatttgatggagtgcctctcgcccgagcaggtgctg
ctattccctgcccaagaaatgctggcagtggaagccgccgcggcgagccccgagatgctg
tcccagcgcattgatgcgttaacgagactcgcttccggattcaccgggatcgtggttacc
ccgtacgcgggcctgcggcgtttgcttccggtcagctctgtttttaccgagtcccaggta
actgtcaaggtgggcgacaccctcgacctggatgcgttcttgacgcagctaaccatgctc
ggctacgaacgggtagagcgggtggagaacaaaggggaaatgagcgtccgcggggggatc
gtcgacctgtatccgttaacctcagaggtagcgttccggatcgagctgttcgacatcgac
gtcgattccattcggtcctttgaggtggctgatcagcgctcgatcgataagcttggggag
ctgacggttaccccgtgcaaagagatcatagcagatagaaagcgcttccaaaatgcatcc
gctcacgcctacgatcttctggaagttcaactcgagaagatggtcgaccggcaggcgaaa
cagaggctgcgggatgaaatccgggatgagataagccggttggagcaaggacagcatttt
gccggaatctataaatatatttccctcttgtatcccgagcagcagacgctgcttgattac
cttccgaaggatgccctgcttataatcgatgagccggcccgtcttctggaaacggccaag
cagctggagcgtgacgaagcggaatgggtgaccggtctgcttcaggaaggcaaatcgctt
cccgctttcgtcatctcgaagccttatgaatctcttcttcagcgaaagccgcaccagacg
ctctatctttctctttttcttcgccaagttccgcaaacccagcctcagaacatcgtgaat
ttcacatgccgggtaatgcagaacttccacgggcagatgaacctgcttaaggcggagatg
gaccgctggaagaaggcgggggcaaacgtccagcttctcgccaacggggaagaacgcaag
gagcgcgtcaagcgggtattgagcgattaccagatcgacgagccggtgatcgtgaacggg
aatttacagaccggcttcgaactgccctctattaaacttgtcgtgatcaccgagggagag
atgttctcccagaagcagcgcaaggcgcgcaaggtcgaaaagagaatagaaaacgccgag
cgtatcaaaagctaccaggagctgaaggtcggcgattatgtcgttcatgtcaatcatgga
atcggcaaatatgtcggaatcggaacgcttgaagtggcgggcatccataaggattacctc
catattctatatgccggcggggataagctgtcggtaccgatcgatcaaatcgacctcatt
cagaagtatgtcgggtccgaggacaaggagcccaagatctataagctcggcgggtccgat
tggaacaaagtcaaaagcaaggtacgctcctccgttaaggatattgcggacgagctcgtt
cagctgtacgccgcgcgccagtcgactcccgggcatccgttcagcaaggattcgacctac
caggacgaattcgaaagcatttttccgtacgaagaaacccgcgaccagctgcgggcgatc
gaagagatcaaggccgatatggagaagccgcggccgatggaccgcctgctctgcggagac
gtgggctacggcaaaaccgaggtggcggttcgcgccgccttcaaggcagcgatcgacggc
aagcaggtcgccattcttgtgccgacgaccattttggcccagcagcattacgaaacgttc
cgggagcggttctccggttatccgtttaacattcaggtgctgagccggttccgctcgaag
aaggaacagaacgaaacgatgaagggaatcaagaacggtacggtcgacgtggtcatcggg
acgcaccggctcctgtccgccgatgtccaattcaaagagctgggccttctcatcgtggat
gaagagcagcgctttggggtatcccacaaggagaagctgaagcggcttaaaaccaatgtc
gatgtgctgaccctaacggcgacgcctattccgcggactctgcacatgtcgatgctcggg
gtgcgggacctgtccgttatcgaaacgccgccggagaaccggttccctgtgcagacctac
gttctcgagcacagcaacgctctaatcagggaagcgatcgagcgggagctggccagggaa
ggccaggtttattacttgtacaaccgcgtgcaaggcattcagcagatggccgatcagatc
tccatgctggtccccgatgccaaggtcattgtcgcccatggccagatgaccgagcaggag
ctggagaagaccatactggacttcctcgacggggagtatgatgtgcttgtcagcacaagc
attattgaaacgggcgtggatatcccgaatgtcaacaccttgattgtgcatgatgccgac
aagatgggcttgtcccagctctaccagcttcgcgggcgggtcggacgctccaaccggatt
gcttatgcctactttacgtatcagcgggataaagtcctcaccgaggtggcggagaaaagg
ctccaggcgattaaagagtttacagaattagggtcagggtttaaaattgctatgagggac
ttgtccattcggggtgcgggcaatttgctcggcgccgagcagcatgggtttattgcttcc
gtaggatttgatatgtattcgcagatgctggccgaggagatcaacaagcgcaaagcggag
atgggcggggaagaagcggctccggaagaagcctggacgacccagctcgaactgcatctg
gatgcctatttgccatcggactatatctatgatagcatgcagaagattgaaatttacaaa
aaagtggcaacgattaccacgctcgaagaggcggacgatctgcatgacgagctcgtcgac
cggttcggggacctgccgcaagcggtcagcaatttgctcgatgtggcgcggatcaaggtt
tacggatccaagtaccggattgagctgatcagccagcgtggcgacgatttccacatcaag
ctgcatgccgaccagaatggaacgttggacggcaagcgcctcgttctcttatccgccaaa
tttgacaatcgcatcaaggtcattccggggccccagatccttatcgaaatcaaaggaaag
ggctacaagccggaacaatcgatagagctgctcgtgaagtttttggagcagtaccgggat
gtgcacaaaccgaagggagaattacagaatgcggcaaattaa
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integrated database retrieval system
