Paenibacillus aurantius: MJA45_25870
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Entry
MJA45_25870 CDS
T09594
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
paun
Paenibacillus aurantius
Pathway
paun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MJA45_25870 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paun03019
]
MJA45_25870 (rnr)
03016 Transfer RNA biogenesis [BR:
paun03016
]
MJA45_25870 (rnr)
Enzymes [BR:
paun01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MJA45_25870 (rnr)
Messenger RNA biogenesis [BR:
paun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MJA45_25870 (rnr)
Transfer RNA biogenesis [BR:
paun03016
]
Prokaryotic type
tRNA degradation factors
MJA45_25870 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
CSD
OB_Dis3
S1_RRP5
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
WNQ11004
UniProt:
A0AA96LBP2
LinkDB
All DBs
Position
complement(5737399..5739825)
Genome browser
AA seq
808 aa
AA seq
DB search
MVTEQELLELLHDEQYKPKTYQELEKHFHIDSAQDFKDFLKLLNGLEEKGLVYRSPNERY
GIPERMNLLRGKLQAHAKGFGFLLPEDKNHPDVYINANDMNGAMNRDEILVRITTRGPAG
GRLEGEVVKIVQRATTRLVGTFQNNESYGFVLPDDKRIVRDIFIPKHAFLGAVDGQKVVV
NIVNYPEGRSAAEGEVIEILGHKDDPGVDILSIIRKFQLPESFPEEVMEEAEAVPDTIRE
EELKGRRDLRAKRIVTIDGEDAKDLDDAVNVEKLENGNYLLGVHIADVSYYVRENSALDR
EAYNRGCSVYLVDRVIPMLPHRLSNGICSLNPKVDRLTMSCEMEIDTNANVVRHDVFTSV
IKTTERMTYTNVRKILTGEEPELLEKYAGLVDDFKLMEELAMKLRNKRINRGAIDFDFQE
SKVIVDEEGKPVDIVKRERSIAEMIIEEFMLKANETVAEHFHWLKVPFLYRIHEDPDAEK
LMNFMVFINNFGYTVRGAKGNTIHPKALQSVLEDIKGTKEETVISTVLLRSMKQARYDSQ
STGHFGLAAEFYSHFTSPIRRYPDLIIHRVIREVLESGTLSEKRIEYLAGRMEDIAKQSS
ERERVAVEAERETDALKKAEFMLDKIGEEFEGIISSVTNFGMFVELPNSVEGLIRLADLT
DDYYHYHENQLALIGERTSKIFRIGDEVKVRVAKVNLDERTIDFEMVDMKPRRASGGAGG
FGGPGGNRGRRGGEGARGEAGRGGAPGRRPRSAGAGSGEGGRRKGAAGGGKAGGAKGGGA
AKPAGAGAGKPARAGGVAPAARKRRKRK
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggttacggagcaggagctattggagcttttgcatgatgagcaatataaaccgaaaacg
taccaggaactggagaagcatttccatatcgacagcgctcaggatttcaaggatttcctt
aaactgttgaatgggttggaagagaagggactcgtttaccggtctcctaatgaaagatat
ggaatccccgagcggatgaacctgctgagaggcaagcttcaggcgcatgccaaggggttc
ggttttctgctgcctgaagacaagaaccacccggatgtctacatcaatgcgaacgacatg
aacggggcgatgaaccgggacgaaatcctcgtgcgcattacgacccggggaccggcaggg
ggaaggctggagggcgaggttgtcaaaatcgttcaaagggccacgacccggctcgtcggg
acgttccagaacaacgaaagctacggcttcgtgcttccggatgacaagcggatcgtgcgg
gatatttttatcccgaagcatgctttccttggggcggtggacggccagaaggtcgtcgtg
aacatcgtcaactacccggaagggcgctccgcggcggaaggggaagtcatcgagattctc
gggcacaaggatgacccgggtgtggacattctgtccatcatccgcaagttccagctgccg
gagagcttcccggaggaagtgatggaggaggccgaagccgttccggatacgatccgggaa
gaggagctgaagggccgccgggacctgcgggcgaagcggattgtgacgatcgacggcgag
gacgccaaggacctggacgatgcggtcaacgtggagaagctggagaacggcaactacctg
ctcggcgtccacattgcggacgtgagctactatgtgcgcgagaactcggctctcgaccgg
gaggcgtacaaccgcggctgcagcgtgtatctggtggaccgggtgatcccgatgctgccg
caccggctgtctaacggcatttgttccttgaatccgaaggtggaccgtctgacgatgtcg
tgcgagatggagatcgatacgaacgcgaatgtcgtgcgccacgacgtcttcaccagtgtg
atcaagacaacggagcggatgacctacaccaacgtccgcaaaatccttaccggggaagag
cccgagctgcttgagaagtatgctggtctggtcgacgacttcaagctgatggaagagctg
gctatgaagcttcgcaacaagcggattaaccgaggcgccatcgatttcgacttccaggaa
tccaaggtgatcgtggacgaagaaggcaagccggtcgatattgtcaaaagggaacgttcc
atcgccgagatgattatcgaggaattcatgctgaaggcgaatgaaacggtggccgagcat
ttccattggctgaaggttccgttcctgtaccggattcacgaggatccggacgccgagaag
ctcatgaatttcatggtgtttattaataatttcggctacacggtgcgtggagccaaggga
aacacgattcatccgaaggcattgcagtccgttctggaggatatcaagggaacgaaggaa
gaaacggtcatcagcacggtactgctgcgttcgatgaagcaggcccgttacgattcccag
agcacggggcacttcggccttgcggcggagttctattcccacttcacttcgccgatccgg
cgttatccggacctgatcatccaccgggtgatccgggaggtgctcgaatccggcacgctc
tccgagaagcggatcgagtatcttgccggacgcatggaagacattgcgaaacagtcctcc
gaacgggagcgggtagccgtcgaggcggaacgggagaccgatgcgctgaagaaagccgag
ttcatgctcgacaagatcggcgaggaattcgagggcatcatctcgagcgtcaccaacttc
ggcatgttcgtcgagctgccgaattcggtggaagggctcatccgtctcgcggatctgacg
gacgattactaccactaccatgagaaccagctcgccttgatcggggagcggacgtcgaag
atcttccgcatcggagatgaggttaaggttcgcgtggcgaaggtgaacctggacgagcgg
accatcgattttgagatggtcgatatgaagccgcggcgtgccagcgggggggccggcggg
ttcggcggcccaggaggcaaccgcggccgccgcggaggcgaaggcgcccgcggcgaggcc
gggcgaggcggtgcgccgggccgcaggccgcgcagcgctggagccggcagcggcgagggc
ggccggcgcaagggcgcagcgggcggcggcaaagccggcggcgcgaagggcggaggcgca
gccaagcccgcaggcgccggagccggcaagccggcccgcgcgggcggcgtagcgccggct
gcccgcaagcggcgcaagcgcaagtag
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integrated database retrieval system
