Propionibacterium australiense: NCTC13651_00562
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Entry
NCTC13651_00562 CDS
T06637
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
paus
Propionibacterium australiense
Pathway
paus03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
paus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC13651_00562 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paus03400
]
NCTC13651_00562 (mfd)
Enzymes [BR:
paus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC13651_00562 (mfd)
DNA repair and recombination proteins [BR:
paus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC13651_00562 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
Cas3-like_C_2
ResIII
UB2H
AAA_22
MFD_D3
RecG_dom3_C
AroM
Motif
Other DBs
NCBI-ProteinID:
VEH89416
LinkDB
All DBs
Position
1:660449..664075
Genome browser
AA seq
1208 aa
AA seq
DB search
MILSGLLDAVLSEPGMADVLRQADAGAGVLDVTGPASVRPLLAAGLAGRTGRPVLLVTST
FREAEQLLEQLAGLLGEDRVAYYPAWETLPHERLSPRSETVGRRLTVLRRLAGRDEAPAP
AVVVAPVRALLQPQVKGLSELAPVHLRVGQDYELGALEADLAAAAYSRVDLVERRGEFAV
RGGIVDIFAPTYDHPVRVDFFGDTIDEMRPFTVADQRSTDETLDVFCAAPCRELLITPQV
RSRAAALADDHPELSEMLTRIAEGQTCEGMEALIPALVPELELLTDAMPADTIVLVADPE
LVRTRAAELVRTSQEFLHASWAAAASGGRAPIDLGASAYRELDRVRDGVLDRGQAWWSLS
AFAATPDTADGAGPVPERPAAVRLAVETVPTWRGDTQAVMDAIRADLAKGWRVVLSVEGR
GLARRMGELLTDNDIGSHVATELTEEPRRGEVTIITSPLRHGLRAPAIELTLIASGDLSS
QPQAERGSRRMPARRKNQVQPLDLKPGDPLVHEQHGVGRFVEMTQRTVGGATREYMVIEY
APSKRGQPGDRLYLPMDQLDQVTRYVGGEAPSLDKMGGADWKQRKSRARRAVKQIAAGLI
KLYAARQATRGHAFGPDTPWQREMEDAFAYTETPDQLACINDVKHDMEQIVPMDRLVSGD
VGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHAQTFTDRYAGFPVVVEQLSRFQTD
QQIARTIEGLASGRVDVVIGTHRLLSDAITFKDLGLVIIDEEQRFGVEHKEALKKLRVNV
DVLSMSATPIPRTLEMAVTGIREMSTIATPPEERHPVLTFAGPYDEGQVVAAIRRELARE
GQVFFVHNRVQDIDRIAARLRDLVPEARVTTAHGQMSEKQLEQVMVDFWQRRADVLVCTT
IVEAGLDISTANTLIVDRADHLGLSQLHQLRGRVGRGRERGYAYFLYPPEKTLTTTAHDR
LAALASNADLGAGMAIAMKDLEIRGAGNLLGDEQSGHIADVGFDLYLRLVGEAVAEFKAG
GPVEIEQAMRIELPVDAHLPVDYVDSERLRLDIYKRIAEVRSDEDIAGLRAELVDRYGPL
PRQGELLLTVAAFRLLCRSVGITEVMAQGNQIRFAPLVGRHAPDGSELELPDSRRVRLER
LYPGTVVKHASNMLLVPAPRTAPIGGRMVDDEELIAWATGFVTAIFAPDQPRAAGATEPG
RTRQPARR
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
gtgatcctctccggcctgctcgacgctgtcctctccgaacccggcatggccgacgtcctg
aggcaggccgacgcgggcgcgggggtcctcgacgtcaccggccccgcctcggtgcggccg
ctgctcgccgccggcctggccgggcgaaccgggcggcccgtgctgctcgtcacctcgacg
ttccgtgaggccgagcagctgctcgagcagctggccggcctgctcggcgaggaccgcgtc
gcctactacccggcctgggagaccctgccgcacgaacgcctcagcccgcgttcggagacc
gtcggccgccgcctgacggtgctgcgccgcctggccggcagggacgaggcgccggccccc
gccgtcgtcgtcgcgcccgtccgcgccctcctccagccccaggtcaaggggctgtccgag
ctcgcccccgtccacctgagggtcggtcaggactacgagctgggcgccctcgaggccgac
ctggcggctgccgcctacagcagggtcgacctggtcgaacgccgcggcgagttcgcggtg
cgcggcggtatcgtcgacatcttcgctcccacctacgaccacccggtccgcgtcgacttc
ttcggcgacaccatcgacgagatgcgtcccttcaccgtcgccgaccagcgctccaccgac
gagaccctcgacgtgttctgcgccgcgccgtgccgcgagctgctcatcacgccgcaggtg
cgttcccgcgccgcggccctggccgacgaccacccagagctgtccgagatgctcaccagg
atcgccgagggccagacctgcgagggcatggaggccctcatcccggcactcgtgcccgag
ctcgaactgctcaccgacgcgatgccggccgacacgatcgtcctcgtcgccgacccagag
ctcgtgcgcacccgcgccgccgagctggtccgcaccagccaggagttcctgcacgcctcc
tgggcggccgcggcgtccggcggacgcgcccccatcgacctgggggcctccgcctaccgc
gaactcgaccgggtgcgcgacggtgtcctcgaccgcggccaggcctggtggtccctgtcg
gccttcgcggcgacccccgacaccgccgacggcgccggaccggtcccggaacgacccgcc
gcagttcgtctcgccgtcgagaccgtccccacctggcgtggggacacccaggccgtcatg
gacgcgatccgcgccgacctggccaagggctggcgcgtcgtgctgtccgtcgagggcagg
gggctggcccggcgcatgggcgagctgctcaccgacaacgacatcggctcccacgtcgcc
accgagctgaccgaggagccgcggcgcggtgaggtgacgatcatcacctcaccgctgcgc
cacggcctgcgcgccccggccatcgagctgacgctcatcgccagcggtgacctgtcgagc
cagccgcaggccgagcgcggctcgcgccgcatgccggcgcgccgcaagaaccaggtgcag
ccgctcgacctgaagcccggtgacccgctcgtccacgagcagcacggggtggggcgcttc
gtcgagatgacccagcgcaccgtcggcggcgccacccgcgagtacatggtcatcgagtac
gcaccctccaaacgcggccagcccggcgaccgcctctacctgccgatggaccagctcgac
caggtcacccgctacgtcggcggcgaggcccccagcctcgacaagatgggcggcgccgac
tggaagcagcgcaagagccgcgccaggcgggccgtgaaacagatcgcggccggcctcatc
aagctgtacgccgcccgccaggccacccgcggccacgccttcggccccgacacgccctgg
cagcgggagatggaggacgccttcgcctacaccgagacgcccgaccagctggcctgcatc
aacgacgtcaagcacgacatggagcagatcgtcccgatggaccgcctggtcagcggcgac
gtcggctacggcaagaccgagatcgccgtgcgcgccgccttcaaggcggtgcaggacggc
aagcaggtggccgtcctcgtgcccaccaccctgctcgtccagcagcacgcccagaccttc
acggaccgctacgccggcttccccgtcgtcgtcgagcagctgagccgcttccagaccgac
cagcagatcgccaggaccatcgagggcctcgcctccggacgcgtcgacgtcgtcatcggg
acccaccgcctgctgtccgacgcgatcacgttcaaggacctcggcctggtcatcatcgac
gaggagcagcgcttcggggtcgagcacaaggaggcgctcaagaagctgcgggtcaacgtc
gacgtgctgtcgatgagcgccaccccgatcccgcgcaccctcgagatggccgtcaccggc
atccgcgagatgagcaccatcgccaccccgcccgaggaacgccacccggtgctcaccttc
gccggcccctacgacgagggacaggtggtcgccgccatccgccgcgaactcgcccgcgag
ggccaggtcttcttcgtccacaaccgggtgcaggacatcgaccgcatcgccgcccgcctc
cgcgacctggtgcccgaggcccgcgtcaccaccgcccacggccagatgagcgagaagcag
ctcgaacaggtcatggtcgacttctggcagcgccgcgccgacgtgctcgtgtgcacgacg
atcgtcgaggccggcctggacatctccaccgccaacaccctcatcgtcgaccgcgccgac
cacctgggcctgtcgcagctgcaccagctgcgcggacgggtcggccggggccgcgaacgc
ggttacgcctacttcctctacccgcccgagaagacgctgacgaccaccgcccacgaccgg
ctggcggccctggcgagcaacgccgacctgggcgccggcatggccatcgccatgaaggac
ctggagatccgcggcgccggcaatctgctcggcgacgagcagtccgggcacatcgccgac
gtcggcttcgacctctacctgcgcctggtgggcgaggccgtcgccgagttcaaggccggc
gggcccgtcgagatcgagcaggcgatgcgcatcgaactgcccgtcgacgcccacctgccc
gtcgactacgtcgactccgagcgcctgcggctggacatctacaagcgcatcgcggaggtc
cgatcggacgaggacatcgccgggctgcgggccgaactcgtcgaccgctacggcccgctg
ccacggcagggggaactgctgctcaccgtggccgccttccgcctgctgtgccgcagcgtc
gggatcaccgaggtcatggcccaggggaaccagatccgcttcgccccgctcgtgggacgt
cacgcgcccgacggcagcgaactcgaactacccgacagccgccgggtgcgactggagcgg
ctctacccgggcacggtcgtcaagcacgcctccaacatgctgctcgtccccgccccgagg
accgcgccgatcggcggacgcatggtcgacgacgaggaactcatcgcctgggcaaccggc
ttcgtcaccgcgatcttcgcgcccgaccagccgcgcgccgccggcgccaccgaacccggc
cgcacccgccagccggcacggcgctga
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