Propionibacterium australiense: NCTC13651_02218
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Entry
NCTC13651_02218 CDS
T06637
Name
(GenBank) Predicted HKD family nuclease
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
paus
Propionibacterium australiense
Pathway
paus03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
paus00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NCTC13651_02218
09124 Replication and repair
03420 Nucleotide excision repair
NCTC13651_02218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paus03021
]
NCTC13651_02218
03400 DNA repair and recombination proteins [BR:
paus03400
]
NCTC13651_02218
Enzymes [BR:
paus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC13651_02218
Transcription machinery [BR:
paus03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
NCTC13651_02218
DNA repair and recombination proteins [BR:
paus03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
NCTC13651_02218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
TetR_C_12
Cox20
Motif
Other DBs
NCBI-ProteinID:
VEH92049
LinkDB
All DBs
Position
1:2512190..2513869
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AA seq
559 aa
AA seq
DB search
MNNDGPLIVQSDRTVLLELAHPLADDARAAIAPFAELERAPEHVHTYRLTPLGLWNARAA
GHDAEQIVHALLTYSRYPVPSALLIEIAETMGRYGVLRIDKDPAHGLVLTSTDEAVLTQV
RRSARTRGLLGQAIDTTTVLVHPSERGRLKQALLKLGWPAEDVAGYVDGEAHPISLAEDG
WKLRAYQDEAAKAFWEGGSGVVVLPCGAGKTIVGAAAMALAGATTLILVTNTVSARQWRA
ELLARTSLTADEIGEYSGAKKQIRPVTIATYQVITTKRNGIHPNLELFSARDWGLVVYDE
VHLLPAPVFRMTADLQARRRLGLTATLVREDGHEADVFSLIGPKRYDAPWRQIEAQGYIA
PADCIEVRVDLPGDMRMAYALADADVRYRLASTASAKLDVVRALVEVHRGVPTLVIGQYV
DQLTELADALGCPIITGGTSTRSRERIYDEFRAGAIDLLVVSKVANFSIDLPAAQVAIQV
SGTFGSRQEEAQRLGRLLRPKQQLPGRLDARDNAAHFYTVVARDTVDADYAQHRQRFLTE
QGYAYRIIDADEVALEGRG
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatgacggccccttgatcgtccagtccgatcgcaccgtgctgctcgagctcgcg
catccgctggccgacgacgcccgcgccgcgatcgctcccttcgccgaactggagcgcgcc
ccagagcacgtccacacctaccgcctgaccccgctggggctgtggaatgcccgggcggcc
ggccacgacgccgagcagatcgttcatgcgctgctcacctactccaggtacccggtgcca
tcggccctgctcatcgagatcgccgagacgatgggccgctacggggtgctgcgcatcgac
aaggaccccgcgcacgggctggtcctcacctcgaccgacgaggccgtcctgacgcaggta
cgccgcagcgcacggaccaggggcctgctggggcaggccatcgacacgacgacggtgctc
gtccacccgtccgaacggggccggctcaagcaggcgctgctcaaactgggctggccggcc
gaggacgtcgccggctacgtggacggcgaggcccatccgatctcgctcgccgaggacggc
tggaagctgcgggcctaccaggacgaggcggcgaaggccttctgggagggcggctccggc
gtcgtcgtcctgccctgcggggccggcaagacgatcgtcggcgcggccgcgatggcgctg
gcgggcgcgacgacgctcatcctggtgacgaacaccgtctcggctcgccagtggcgggcc
gaactcctcgctcggacgagcctcacggcggacgagatcggcgagtactcgggcgcgaag
aagcagatccgtccggtgacgatagccacctaccaggtcatcacgaccaagcggaacgga
atccacccgaatctcgagctcttcagcgcccgcgactgggggctggtcgtctacgacgag
gtccatctgctgccggcaccggtcttccggatgacagcggatctgcaggcccgccgccgt
ctgggcctcaccgccaccctcgtccgcgaggacggccatgaggccgacgtcttcagcctc
atcgggcccaaacgttacgacgccccgtggcgtcagatcgaggcccagggctacatcgcg
cccgccgattgcatcgaggtgcgggtcgacctaccgggggacatgcggatggcctatgcg
ctggcggacgccgacgtgcggtaccggctggcgtccacggcgagcgccaagctcgatgtc
gtacgcgctctcgtcgaggtgcaccggggcgtgcccactctcgtcatcggccagtacgtc
gaccagctcaccgaactcgccgacgccctgggctgcccgatcatcacgggcgggacgagc
acgaggagccgcgaacggatctacgacgagttccgtgccggcgccatcgacctgctcgtg
gtgagcaaggtggcgaacttctccatcgacctgcctgcggcccaagtggcgatccaggtc
tcgggcaccttcggctcgcgccaggaggaggcgcagcggctcggccggttgctgcgaccc
aaacagcagctgcccggtcgcctcgacgcacgggacaacgcggcacacttctacacggtg
gtggcccgtgacaccgtggacgccgactacgcccagcaccggcaacgattcctcaccgag
cagggctacgcctaccggatcatcgacgccgacgaggtggcgctggagggccggggctga
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