Pseudonocardia autotrophica: Pdca_00920
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Entry
Pdca_00920 CDS
T06156
Name
(GenBank) putative formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
paut
Pseudonocardia autotrophica
Pathway
paut03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
paut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Pdca_00920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paut03400
]
Pdca_00920
Enzymes [BR:
paut01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Pdca_00920
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Pdca_00920
DNA repair and recombination proteins [BR:
paut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Pdca_00920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zf-TFIIB
OrfB_Zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
BBF98882
LinkDB
All DBs
Position
96117..96992
Genome browser
AA seq
291 aa
AA seq
DB search
MPELPEVEALAHHLREHAVYRPVARVDLASMSALKTFDPPVSALTGRVVTGASRFGKFLS
VDLADRPDEPLHLITHLSRAGWLRWHATAGSTPPKPGRGPLQLRVHLDAVGGPGFDLTEA
GTQKRLAVYLVTDPAQVPGIVRLGPDALELTRPGLDELLDGDNRRLKTLLTDQRTLAGVG
NAYSDEILHTARLSPYAVGARLDEAARDRLFAALHGVLDDAVERSVGQGAAELKGEKRSG
LRVHARTGLPCPVCGDTVREVSFAERSFQYCPTCQTGGKPLADRRLSRLVR
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgaactgccggaggtggaggccctcgcacaccacctgcgcgagcacgccgtgtac
cgcccggtggcccgggtggacctggcatcgatgagcgcgctcaagaccttcgatccgccg
gtgtcggcgctgaccggccgggtcgtgaccggcgcgtcccggttcgggaagttcctctcg
gtcgatctcgccgaccggccggacgagccgttgcacctgatcacgcacctgtcccgggcc
ggatggctgcgctggcacgcgaccgccggcagcacgccgccgaaaccggggcgcggcccg
ctgcagctgcgggtgcatctcgacgccgtcggcggccccggtttcgacctgaccgaggcc
ggcacccagaaacggctcgccgtgtacctggtgacggacccggcgcaggtgcccgggatc
gtgcggctggggcccgatgcgctggagctgacccggcccgggctcgacgagctgctcgac
ggcgacaaccgccggctcaagacgctgctgaccgatcagcggacgctggccggggtcggt
aacgcctactccgacgagatcctgcacaccgcgcggctctccccgtacgccgtcggtgcc
cggctcgacgaggcggctcgggaccggctgttcgcggcgctgcacggggtgctcgacgac
gccgtcgagcggtcggtgggccagggcgcggccgagctgaagggcgagaagcgctccggt
ctgcgggtgcacgcccggaccggactgccctgtccggtctgcggcgacaccgtccgggag
gtgtcgttcgccgagagatcgttccagtactgtccgacctgccagaccggtggcaagccg
cttgcggaccgtcggttgtcccggctggtgaggtag
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