Pseudonocardia autotrophica: Pdca_04570
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Entry
Pdca_04570 CDS
T06156
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
paut
Pseudonocardia autotrophica
Brite
KEGG Orthology (KO) [BR:
paut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paut03032
]
Pdca_04570 (topA)
03400 DNA repair and recombination proteins [BR:
paut03400
]
Pdca_04570 (topA)
Enzymes [BR:
paut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Pdca_04570 (topA)
DNA replication proteins [BR:
paut03032
]
Prokaryotic type
DNA Topoisomerases
Pdca_04570 (topA)
DNA repair and recombination proteins [BR:
paut03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Pdca_04570 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
BBF99247
LinkDB
All DBs
Position
complement(466963..469713)
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AA seq
916 aa
AA seq
DB search
MIVESPTKARKIQPYLGDNYIVESSVGHIRDLPRGAADVPAKYKGESWARLGVDVDNQFS
PLYIVTPEKRSTVSELREALKSVDELLLATDPDREGEAIAWHLLETLKPKVPVRRMVFHE
ITESAIRAAAENTRELDQDLVDAQETRRILDRLYGYEVSPVLWKKVMPKLSAGRVQSVAT
RLIVQRERERIAFRSADYWDIAATMNAGAEATPRTFGARLVQVGGSRVATGRDFGSDGKL
KSGSDVVVLDEAGARRLAESLEGRDLAVASVESKPYTRKPYAPFMTSTLQQEAGRKLRFS
SERTMRSAQRLYENGYITYMRTDSTTLSSSAIDAARAQARELYGDAYVADKPRQYTRKVK
NAQEAHEAIRPAGESFRTPGAIAREVDGDDFRLYELIWQRTIASQMTDARGTTVSIRIAG
TAGTGEDVVFASSGRTITFAGFLKAYVETVEEGSGAAADDAESRLPELTEGQALTADELT
PDGHSTNPPSRYSEPSLVKALEELGIGRPSTYASIIKTILDRGYVWKKGSALVPSWVAFA
VVGLMEAHFGQLVDYDFTAAMEDDLDSIASGSDSRTDWLSKFYFGASDGGEGSIQRAGGL
KKLVGSNLEEIDARTVNSIKMFADAEGREVVVRVGRYGPYLERIVDGESQRANLPDDLPP
DELSEEIAEKLFSVPQEGRKLGPDPVTGHEIVAKEGRFGPYVTELLPEPEVPEGAKKKPA
KPKPRTGSLFKSMSVDTVTLEDALKLLSLPRVVGKDPESGDEITAQNGRYGPYLKKGTDS
RSLGDEEQLFTVTLEQALEIYSQPKQRGRAAAAPPLRELGEDPSTSKKMVIKDGRFGPYV
TDGETNASLRKGDSVEEITDERASELLAERRAKAPVKKKAAPRRTAAASKSGGTTARSTA
AKKTGTTSRARKSPTT
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgtcgagtccccgaccaaggcgcggaagatccagccgtacctgggggacaactac
atcgtggagtcctcggtcggccacatccgggacctgccgcgcggtgcggccgacgtcccc
gccaagtacaagggcgagtcctgggcgcgactcggcgtcgacgtcgacaaccagttcagc
ccgctctacatcgtcacgccggagaagcggagcaccgtctccgagctgcgcgaggcactc
aaatcggtggacgagctgctgctcgcgacggaccccgaccgcgagggcgaggcgatcgcc
tggcacctgctggagaccctcaagccgaaggtccccgtccgccggatggtgttccacgag
atcaccgagtccgcgatccgggccgccgcggagaacacccgcgagctcgaccaggacctc
gtcgatgcccaggagacccgccgcatcctggaccggctctacggctacgaggtctccccc
gtgctgtggaagaaggtcatgccgaagctgtcggcgggccgcgtgcagtcggtggcgacc
cggctgatcgtgcagcgggagcgcgagcggatcgcgttccgctccgccgactactgggac
atcgccgcgacgatgaacgcgggagccgaggcgaccccgcgcaccttcggtgcccggctg
gtccaggtcggcggctcccgggtcgcgaccggccgcgacttcgggtcggacggcaagctc
aagtcgggctccgacgtcgtcgtcctcgacgaggcgggcgcccgccggctggcggagtcc
ctcgagggccgcgatctcgccgtcgcctcggtggagtcgaagccctacacccgcaagccg
tacgcgccgttcatgacctcgaccctgcagcaggaggccggccgcaagctccggttctcc
tcggagcgcacgatgcgcagcgcgcagcggctctacgagaacggctacatcacctacatg
cgaacggactcgaccacgctgtcgagctccgcgatcgacgcggcccgggcccaggcccgt
gagctgtacggcgacgcctacgtcgccgacaagccgcgtcagtacacccgcaaggtgaag
aacgcgcaggaggcccacgaggcgatccgcccggccggcgagtcgttccgcactcccggt
gcgatcgcccgcgaggtggacggcgacgacttccggctctacgagctgatctggcagcgg
accatcgcctcccagatgaccgacgcccgcggcaccacggtcagcatccggatcgccggc
accgccgggaccggcgaggacgtcgtgttcgcgtcgtccggccggacgatcaccttcgcc
ggtttcctcaaggcctacgtcgagacggtcgaggaggggtccggcgccgccgccgacgac
gccgagtcccggctgccggagctcaccgagggccaggcgctgaccgccgacgagctgacc
ccggacgggcactccaccaacccgccgtcccggtactccgagccctcgctggtgaaggcg
ctggaggagctgggcatcggcaggccgtcgacctacgcgtcgatcatcaagacgatcctg
gaccgcggctacgtctggaagaagggctccgcgctcgtcccgtcgtgggtggcgttcgcg
gtcgtcgggctgatggaggcgcacttcggtcagctcgtcgactacgacttcaccgccgcg
atggaagacgatctggactccatcgcgtccggctcggactcccggaccgactggctgtcg
aagttctacttcggcgcgtcggacggcggcgagggttcgatccagcgggccggtgggctg
aagaagctggtcggctcgaacctggaggagatcgacgcccgcacggtgaactcgatcaag
atgttcgccgacgccgagggccgcgaggtcgtcgtccgggtgggtcgttacggcccctac
ctggagcggatcgtcgacggcgagtcgcagcgcgccaacctgcccgacgacctgccgccg
gacgagctgtccgaggagatcgccgagaagctgttctcggtgccgcaggagggccgcaag
ctgggccccgacccggtgaccgggcacgagatcgtggcgaaggagggccgcttcggcccg
tacgtcaccgagctcctgcccgagccggaggtcccggagggcgccaagaagaagccggcc
aagccgaagccgcgcaccgggtcgctgttcaagtcgatgtcggtggacaccgtgacgctg
gaggacgcgctgaagctgctgtcgctgccccgcgtcgtcggcaaggacccggagtccggt
gacgagatcaccgcgcagaacggccggtacgggccgtacctgaagaagggcaccgactcc
cgctcgctcggcgacgaggagcagctgttcaccgtcaccctcgagcaggcgctggagatc
tactcccagcccaagcagcggggccgggcggccgccgcgccgccgctgcgcgagctgggc
gaggacccgtcgacgagcaagaagatggtgatcaaggacggccggttcgggccgtacgtc
accgacggcgagaccaacgccagcctgcgcaagggcgactcggtcgaggagatcaccgac
gagcgggcctcggagctgctcgccgagcgccgggccaaggcaccggtgaagaagaaggcg
gcaccgcggcgaaccgcggcggcctccaagagcggtgggacgacggcccggagcacggcc
gcgaagaagaccggaacgacatcccgggcccggaagagcccgacgacctga
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