Pseudonocardia autotrophica: Pdca_19840
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Entry
Pdca_19840 CDS
T06156
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
paut
Pseudonocardia autotrophica
Pathway
paut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pdca_19840 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paut03019
]
Pdca_19840 (rnj)
Messenger RNA biogenesis [BR:
paut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pdca_19840 (rnj)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
BBG00775
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Position
2052553..2054307
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AA seq
584 aa
AA seq
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MSPQRNDRRNRPGRSLSAPPEKIDRPELPVAAPPALAKGGLRTFALGGIGEVGRNMTVFE
YEGRLLVVDCGVLFPSDDSPGVDLILPDFRAIEDRLDDIDALVLTHGHEDHIGAVPWLLR
MRPDLPVIGSRFTLALVAAKCKEHRLTPHLREVKEGDRVRHGNWDCEYFAVNHSIPDAIA
VAIRTPAGLLLHTGDIKLDQLPLDGRLTDLAGFSRLGEEGVDLFLVDSTNAEVPGFVTPE
TEIGPVIADLVRRAPSRIILACFASHVHRVQQVLDAAHAHGRKVCLTGRSMVRNMGLADE
HSLLNIPDGLLVDIDEAMRLPDEKLVLVSTGSQGEPLAALSRMARGDHRSIVIRPDDTII
LASSLIPGNETAVFGVINGLTRLGATVVHQGNAKVHVSGHAPAGELLFLYNAVRPSNVMP
VHGEWRHLRANAALAVKTGVPEESVVIAENGVVVDLVDGRAAIAGRVEVGQVYVDGLAVG
DIGETTLGDRLTLGEGGFIAITIAIDQKTGRALSRPTLSGRGFSDDPKALDAVQPLVEDE
LSRLENEGIGDPHRIAQGVRRVVGRWVADTYRRRPMIVPTVIAV
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
gtgagtccccagcgcaacgaccgccggaaccgccccgggcggtccctgagcgccccgccc
gagaagatcgaccggcccgagctgccggtcgcggcgccgccggcgctggccaagggtggg
ctgcgcaccttcgccctcggcggcatcggcgaggtcggccggaacatgacggtcttcgag
tacgagggccggctgctcgtcgtcgactgcggcgtgctgttcccgtccgacgactcgccc
ggcgtcgacctgatcctgcccgacttccgggcgatcgaggaccgcctcgacgacatcgac
gccctggtgctgacgcacggccacgaggaccacatcggtgccgtcccgtggctgctccgg
atgcgcccggacctgccggtcatcggctcccggttcacgctcgcactggtcgcggccaag
tgcaaggagcaccgcctgaccccgcacctgcgggaggtcaaggagggcgaccgggtccgg
cacggcaactgggactgcgagtacttcgcggtcaaccactccatcccggacgccatcgcg
gtcgcgatccgcacgccggccgggctgctgctgcacaccggcgacatcaagctcgaccag
ctcccgctggacggccggctgaccgacctggccggcttctcccggctcggcgaggagggc
gtcgacctgttcctggtcgactccaccaacgccgaggtcccgggcttcgtgacaccggag
accgagatcggcccggtgatcgccgacctggtccgccgggccccgtcccggatcatcctg
gcctgtttcgccagccacgtgcaccgggtccagcaggtgctcgacgcggcgcacgcgcac
ggccgcaaggtctgcctgaccggccggtcgatggtccgcaacatggggctcgccgacgag
cactcactgctgaacatcccggacgggctgctcgtcgacatcgacgaggcgatgcggctg
cccgacgagaagctggtgctcgtctcgaccgggtcgcagggcgagccgctcgccgcgctg
tcccggatggcccgcggcgaccaccgcagcatcgtcattcggccggacgacacgatcatc
ctcgccagctcgctgatccccggcaacgagaccgccgtgttcggcgtgatcaacggactg
acccggctcggcgcgaccgtcgtccaccagggcaacgccaaggtgcacgtctccgggcac
gccccggcgggcgagctgctgttcctctacaacgcggtgcgcccgtcgaacgtgatgccg
gtgcacggcgagtggcggcacctgcgcgccaacgccgcactggcggtgaagaccggtgtg
ccggaggagtcggtggtgatcgccgagaacggcgtcgtcgtcgacctggtcgacggccgg
gccgcgatcgccgggcgggtcgaggtcggccaggtctacgtcgacggcctcgccgtcggc
gacatcggcgagacgacgctgggcgaccggctgaccctgggcgagggtggcttcatcgcg
atcaccatcgcgatcgatcagaagaccggccgggcgctgtcccgcccgaccctgtccggc
cgcgggttctccgacgacccgaaggccctcgacgccgtccagccactggtggaggacgag
ctgtcccggctggagaacgagggcatcggcgatccgcaccggatcgcgcagggcgtgcgc
cgggtcgtcgggcgctgggtggccgacacctaccgccgtcgtccgatgatcgtgccgacg
gtcatcgcggtctga
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