Pseudonocardia autotrophica: Pdca_26580
Help
Entry
Pdca_26580 CDS
T06156
Symbol
recB
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
paut
Pseudonocardia autotrophica
Pathway
paut03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Pdca_26580 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paut03400
]
Pdca_26580 (recB)
Enzymes [BR:
paut01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Pdca_26580 (recB)
DNA repair and recombination proteins [BR:
paut03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Pdca_26580 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PDDEXK_1
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
BBG01449
LinkDB
All DBs
Position
complement(2791284..2794799)
Genome browser
AA seq
1171 aa
AA seq
DB search
MTAVLSAPTFSVDGPLPEGTVVLEASAGTGKTYTIAALATRYVAEGIAGLDRLMLVTFGR
DATQELRERVRERLVGTERALAAVLAGAAVPDTDPVVALLAAGDPADVERRRARLAEASA
SFDAATIATTHQFCMQMLAGLGVAGDNDPEAEFVEHVDDVVTEVVDDFYVRKYANPDAGR
PAFTRAEALALARRAVADPQAELEPRDADPRSVAAVRHGFATAVRREVDARKRRLRIYSY
DDMLTRLAQALRDPLRGPAARERLRSRFSVVLVDEFQDTDPLQWEILSLAFHSAPGTTLV
LIGDPKQAIYAFRGADVHSYLQARAAATERRTLSTNRRSDRALLGALERVFGEATLGDPE
IVVHPVDAHHTTSRLTAPRDAPLRLRLVDRDRLDLTGRQLGRAPGARRVVARDVAADLSE
LLAGSATYDGEPLRPGQVAVLVRTNAQGVLVRDACAQAGVPAVLTGSTSVFTTPAALDWL
TLLEAVEQPQRTLRLRAAALTRFVGHTVADLCGPDADRLVDALGADLRGWHTVLAERGVA
ALAEAVFARYAPARRLLSRPDGERDLTDLRHVGQVVHSAALERHLGPTALTEWLRHRIGE
AARDTSAERSRRLESDADAVQIVTVHRSKGLEFPVVYLPFAWDRWVNDTPDPLLYHDTAP
GGGPRRLLDVGGSTGPDRPGRTALHQAEEAGEDLRLLYVALTRACSQVVAWWVPATTTAA
SSLHRVLLGHGGPGAEPATTAKVPGDAVALQYLRERLDGSGAIVETLHDREPVRRPADPD
DDQPAVAEFRRSLDTAWRRTSYTALTAAAHAAHRIPLGDEPDEAPAGTPGVLTEPEVEGI
RDEPEAAGGPAGPVTTGPRSGAAEPQPGAAGARSAATGPQPGPDPAAVPSPMADLPMGAG
FGTLVHAVLEHLDTTVAARGDDALRTELVAHVTAELTRQPADVDPEALADALVPVLRTPL
GPLASGRSLADFAPADRLSELDFELPLRGGDTPTGLLTLAGLATAVRNRIGPGDPLHGYA
DRLDGPDLAGQPLRGYLTGSIDSVLRVDGRYLVVDYKTNWLGPAGPSGREPLTAAHYTAD
RMAEAMSDAHYPLQALLYAVALHRFLRWRLPDYDPESHLGGVGYLFLRGMCGPATPVTGV
PPLAAPCGVFAWRPPAALVEDLSELLDGART
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgccgttctctccgccccgaccttctccgtcgacgggccgctgcccgagggcacc
gtcgtgctggaggccagcgccgggaccgggaagacctacacgatcgccgcgctggccacc
cgctacgtggccgaggggatcgccgggctggaccggctgatgctggtcaccttcggccgc
gacgccacccaggagctgcgggaacgggtccgggagcggctggtcggcaccgagcgggcg
ctcgccgcggtgctcgccggtgcggccgtgccggacaccgatccggtagtcgcgctgctc
gccgcgggcgacccggccgacgtcgagcggcggcgggcccggctggcggaggcgtcggcg
tcgttcgacgcggccacgatcgccaccacccaccagttctgcatgcagatgctggccggg
ctcggggtggccggcgacaacgatccggaggccgagttcgtcgagcacgtcgacgacgtc
gtcaccgaggtcgtcgacgacttctacgtccgcaagtacgcaaacccggatgccgggcgg
cccgccttcacccgcgccgaggcactcgcgctggcccgccgcgcggtcgccgacccgcag
gccgagctggagccccgcgacgccgatccacgctccgtcgcggcggtgcggcacggcttc
gccaccgccgtgcggcgcgaggtcgacgcccgcaagcggcggctgcggatctacagctac
gacgacatgctgacccggctggcccaggcgctgcgcgacccgctgcgcggtccggcggcc
cgggagcggctgcggtcgcgcttctcggtggtcctggtggacgagttccaggacaccgat
ccgctgcagtgggagatcctgtcgctggccttccactcggcgcccggcacgacgctggta
ctgatcggcgatcccaagcaggcgatctacgcgttccgcggggccgacgtgcacagctac
ctgcaggccagggctgccgcgaccgagcggcgcacgctgtccaccaaccggcgcagcgac
cgggcgttgctcggcgccctggagcgggtgttcggcgaggccacgctgggcgacccggag
atcgtcgtgcacccggtcgacgcgcaccacacgacgagcaggctcaccgccccgcgggac
gcgccgctgcggctgcgcctggtcgaccgggaccggctcgatctcaccggccggcagctg
ggccgggcccccggcgcacggagggtcgtggcccgcgacgtcgccgccgacctgtcggag
ctgctcgccggctcggcgacctacgacggcgagccgctgcgccccggtcaggtcgccgtc
ctggtccggacgaacgcgcagggtgtcctggtccgcgacgcctgcgcgcaggccggtgtc
cccgcggtgctgaccggcagcaccagcgtgttcaccaccccggccgcgctggactggctc
accctgctggaggccgtcgagcagccgcagcggacattgcggctgcgggcggcggcgctg
acccggttcgtcgggcacaccgtcgccgatctctgcgggcccgacgccgaccggctggtc
gacgcgctcggtgccgacctgcgcggctggcacacggtgctcgccgagcgcggggtcgcc
gcgctggccgaggcggttttcgcccggtacgccccggcccggcggctgctgtcccggccg
gacggcgagcgcgacctcaccgacctgcggcacgtcgggcaggtcgtgcactcggccgcg
ctggagcgccatctcggcccgaccgccctcaccgagtggctgcggcaccggatcggcgag
gccgcccgggacacctccgccgagcgcagcaggcgcctcgagtccgacgccgacgccgtc
cagatcgtcaccgtgcaccggtcgaagggcctcgagttcccggtcgtctacctgccgttc
gcctgggaccgctgggtcaacgacacccccgacccgctcctgtaccacgacaccgccccc
ggtggcgggccgcggcggttgctcgacgtcggcggatcgaccggcccggaccggccgggt
cgcaccgcgctgcaccaggccgaggaggccggcgaggacctgcggctgctctacgtcgcc
ctgacccgcgcgtgcagccaggtcgtcgcctggtgggtgcccgcgacgaccaccgcggcg
tcgtcgctgcaccgggtcctgctcgggcacggcgggcccggtgccgagccggccaccacc
gcgaaggtccccggcgacgcggtagctctgcagtacctgcgggagcggctcgacggcagc
ggcgcgatcgtggagaccctgcacgatcgcgagccggtgcgccgccccgccgatccggac
gacgaccagcccgcggtcgcggagttccgccgcagcctggacacggcatggcggcgcacg
tcctacaccgcgctcaccgcggccgcgcacgccgcgcaccggattccgctcggcgacgaa
ccggacgaggcaccggcgggcacgccgggggtgctcaccgaacccgaggtcgagggcatc
cgcgacgagccggaggccgccggtgggcccgcggggccggtcaccaccgggccgcgatcg
ggcgctgccgagccgcagccgggggccgccggagcgcgatcagcggccaccgggccgcag
ccggggcccgatccggccgccgtgccgtcgccgatggcggacctgccgatgggcgccggc
ttcggcaccctggtgcacgccgtcctggaacacctcgacacgaccgtcgccgcgcgaggc
gacgacgcgctgcgcaccgagctggtcgcccacgtcaccgcggagctgacccgccagccc
gccgacgtcgatcccgaggcactggccgacgcgctggtgccggtgctgcgcaccccgctc
ggcccgctcgcgtccggccggtcactcgccgacttcgcccccgccgaccggctctccgag
ctcgacttcgagctgccgctgcgcggcggcgacaccccgaccggcctgctcaccctcgcc
gggctcgccacggccgtccgcaaccggatcgggcccggtgacccgctgcacggttacgcc
gaccggctcgacggtcccgacctggccgggcagccgctgcgcggttacctgaccggcagc
atcgactcggtgctgcgggtcgacgggcgctacctggtcgtcgactacaagacgaactgg
ctcggcccggcggggccgagcgggcgggagccgctcaccgcggcgcactacaccgcggac
cggatggccgaggccatgagcgacgctcactacccgctgcaggccctgctctacgcggtc
gcgctgcaccgtttcctgcgctggcggttgccggactacgacccggagagccatctgggc
ggtgtcggctatctgttcctgcgcggcatgtgcgggccggcgaccccggtgaccggtgtt
cccccgctggccgcgccgtgcggggtgttcgcctggcggccaccggccgcgctggtcgag
gacctgtcggagctgctggacggagcccgcacatga
DBGET
integrated database retrieval system